Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 OR5H2-201ENST00000355273 945 ntBASIC3.94□□□□□ -1.78
VPS28Q9UK41 RNU6-173P-201ENST00000364215 104 ntBASIC3.94□□□□□ -1.78
VPS28Q9UK41 RNU6-343P-201ENST00000364709 104 ntBASIC3.94□□□□□ -1.78
VPS28Q9UK41 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
VPS28Q9UK41 U1.1-201ENST00000384101 164 ntBASIC3.94□□□□□ -1.78
VPS28Q9UK41 MIR199A2-201ENST00000385289 110 ntBASIC3.94□□□□□ -1.78
VPS28Q9UK41 SNORA57.3-201ENST00000411095 141 ntBASIC3.94□□□□□ -1.78
VPS28Q9UK41 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC3.94□□□□□ -1.78
VPS28Q9UK41 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS28Q9UK41 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
VPS28Q9UK41 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS28Q9UK41 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS28Q9UK41 AL500522.2-201ENST00000448562 343 ntBASIC3.94□□□□□ -1.78
VPS28Q9UK41 RPL23AP31-201ENST00000456160 467 ntBASIC3.94□□□□□ -1.78
VPS28Q9UK41 RN7SL542P-201ENST00000467147 294 ntBASIC3.94□□□□□ -1.78
VPS28Q9UK41 AC106872.2-201ENST00000494303 480 ntBASIC3.94□□□□□ -1.78
VPS28Q9UK41 TXNP6-201ENST00000510190 310 ntBASIC3.94□□□□□ -1.78
VPS28Q9UK41 AC093677.1-201ENST00000514414 678 ntBASIC3.94□□□□□ -1.78
VPS28Q9UK41 AC239860.2-201ENST00000525886 270 ntBASIC3.94□□□□□ -1.78
VPS28Q9UK41 SYF2P1-201ENST00000550658 413 ntBASIC3.94□□□□□ -1.78
VPS28Q9UK41 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.94□□□□□ -1.78
VPS28Q9UK41 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.94□□□□□ -1.78
VPS28Q9UK41 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS28Q9UK41 AC009097.3-201ENST00000563557 1018 ntBASIC3.94□□□□□ -1.78
VPS28Q9UK41 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.94□□□□□ -1.78
VPS28Q9UK41 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC3.94□□□□□ -1.78
VPS28Q9UK41 AL354943.1-201ENST00000572103 781 ntBASIC3.94□□□□□ -1.78
VPS28Q9UK41 AC087499.8-201ENST00000578406 226 ntBASIC3.94□□□□□ -1.78
VPS28Q9UK41 AP001330.4-201ENST00000604350 154 ntBASIC3.94□□□□□ -1.78
VPS28Q9UK41 AL133507.1-201ENST00000605269 557 ntBASIC3.94□□□□□ -1.78
VPS28Q9UK41 TUG1_1.1-201ENST00000610654 145 ntBASIC3.94□□□□□ -1.78
VPS28Q9UK41 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
VPS28Q9UK41 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
VPS28Q9UK41 AC034229.5-201ENST00000624258 185 ntBASIC3.94□□□□□ -1.78
VPS28Q9UK41 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS28Q9UK41 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
VPS28Q9UK41 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
VPS28Q9UK41 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS28Q9UK41 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
VPS28Q9UK41 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.93□□□□□ -1.78
VPS28Q9UK41 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
VPS28Q9UK41 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS28Q9UK41 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS28Q9UK41 SNORD6-201ENST00000365444 73 ntBASIC3.93□□□□□ -1.78
VPS28Q9UK41 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
VPS28Q9UK41 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS28Q9UK41 RNU6ATAC-201ENST00000408749 126 ntBASIC3.93□□□□□ -1.78
VPS28Q9UK41 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.93□□□□□ -1.78
VPS28Q9UK41 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.93□□□□□ -1.78
VPS28Q9UK41 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.93□□□□□ -1.78
VPS28Q9UK41 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.93□□□□□ -1.78
VPS28Q9UK41 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.93□□□□□ -1.78
VPS28Q9UK41 BEND7P1-201ENST00000422058 457 ntBASIC3.93□□□□□ -1.78
VPS28Q9UK41 AC093698.1-201ENST00000423843 571 ntBASIC3.93□□□□□ -1.78
VPS28Q9UK41 Z74696.2-201ENST00000436514 498 ntBASIC3.93□□□□□ -1.78
VPS28Q9UK41 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC3.93□□□□□ -1.78
VPS28Q9UK41 EXTL2P1-201ENST00000446218 416 ntBASIC3.93□□□□□ -1.78
VPS28Q9UK41 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.93□□□□□ -1.78
VPS28Q9UK41 RPS17P13-201ENST00000448974 407 ntBASIC3.93□□□□□ -1.78
VPS28Q9UK41 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS28Q9UK41 ANP32BP2-201ENST00000454525 545 ntBASIC3.93□□□□□ -1.78
VPS28Q9UK41 AC104563.1-201ENST00000476147 376 ntBASIC3.93□□□□□ -1.78
VPS28Q9UK41 RPL7P24-201ENST00000493052 752 ntBASIC3.93□□□□□ -1.78
VPS28Q9UK41 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.93□□□□□ -1.78
VPS28Q9UK41 SAP18P1-201ENST00000512058 390 ntBASIC3.93□□□□□ -1.78
VPS28Q9UK41 AC024589.1-201ENST00000512207 263 ntBASIC3.93□□□□□ -1.78
VPS28Q9UK41 AC026726.1-201ENST00000512859 601 ntBASIC3.93□□□□□ -1.78
VPS28Q9UK41 SNORA70.14-201ENST00000516205 110 ntBASIC3.93□□□□□ -1.78
VPS28Q9UK41 RNA5SP164-201ENST00000516533 110 ntBASIC3.93□□□□□ -1.78
VPS28Q9UK41 IGKV2D-23-201ENST00000518179 286 ntBASIC3.93□□□□□ -1.78
VPS28Q9UK41 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC3.93□□□□□ -1.78
VPS28Q9UK41 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC3.93□□□□□ -1.78
VPS28Q9UK41 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.93□□□□□ -1.78
VPS28Q9UK41 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.93□□□□□ -1.78
VPS28Q9UK41 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.93□□□□□ -1.78
VPS28Q9UK41 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.93□□□□□ -1.78
VPS28Q9UK41 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS28Q9UK41 AC006254.3-201ENST00000603353 884 ntBASIC3.93□□□□□ -1.78
VPS28Q9UK41 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.93□□□□□ -1.78
VPS28Q9UK41 AL136981.2-201ENST00000617319 734 ntBASIC3.93□□□□□ -1.78
VPS28Q9UK41 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS28Q9UK41 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.93□□□□□ -1.78
VPS28Q9UK41 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
VPS28Q9UK41 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
VPS28Q9UK41 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS28Q9UK41 SGO1P2-201ENST00000429458 1589 ntBASIC3.93□□□□□ -1.78
VPS28Q9UK41 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
VPS28Q9UK41 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
VPS28Q9UK41 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS28Q9UK41 AL161781.1-201ENST00000354277 403 ntBASIC3.92□□□□□ -1.78
VPS28Q9UK41 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
VPS28Q9UK41 RNU6-931P-201ENST00000363850 107 ntBASIC3.92□□□□□ -1.78
VPS28Q9UK41 Y_RNA.234-201ENST00000364409 97 ntBASIC3.92□□□□□ -1.78
VPS28Q9UK41 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.92□□□□□ -1.78
VPS28Q9UK41 AC083875.1-201ENST00000419509 405 ntBASIC3.92□□□□□ -1.78
VPS28Q9UK41 TXNL1P1-201ENST00000429528 554 ntBASIC3.92□□□□□ -1.78
VPS28Q9UK41 AL445584.1-201ENST00000431451 330 ntBASIC3.92□□□□□ -1.78
VPS28Q9UK41 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS28Q9UK41 AC007389.2-201ENST00000434630 306 ntBASIC3.92□□□□□ -1.78
VPS28Q9UK41 AC004866.2-201ENST00000438285 481 ntBASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms