Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 AL122016.1-201ENST00000403365 367 ntBASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 AC127526.1-201ENST00000417526 366 ntBASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 AL358176.3-201ENST00000420757 454 ntBASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 RPS3AP50-201ENST00000487064 803 ntBASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 ENPP7P11-201ENST00000505915 627 ntBASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 CDV3-208ENST00000511392 554 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 AC023050.3-201ENST00000541142 333 ntBASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 BNIP3P6-201ENST00000549284 499 ntBASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 AC008782.1-201ENST00000603386 430 ntBASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 AC093913.1-201ENST00000614178 329 ntBASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 AC009248.2-201ENST00000619826 254 ntBASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 AC079684.1-201ENST00000621405 437 ntBASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 TPTEP1-208ENST00000636884 213 ntBASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 GVINP1-202ENST00000531871 7271 ntBASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 OR4G1P-203ENST00000641984 1631 ntBASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 RNU6-996P-201ENST00000365438 107 ntBASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 MTCO3P12-201ENST00000416718 547 ntBASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 NPM1P18-201ENST00000434232 732 ntBASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 CACYBPP2-201ENST00000453625 678 ntBASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 RN7SL517P-201ENST00000462240 305 ntBASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 HMGN1P10-201ENST00000474557 553 ntBASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 AC233702.1-201ENST00000482905 502 ntBASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 AC105417.1-201ENST00000514691 285 ntBASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 SCARNA24.1-201ENST00000516465 137 ntBASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 Y_RNA.719-201ENST00000517156 106 ntBASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 AC018552.3-201ENST00000567416 561 ntBASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 AC005668.1-201ENST00000571142 476 ntBASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 AL355375.2-201ENST00000574825 175 ntBASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 AC022432.1-201ENST00000595739 310 ntBASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC87Q9NVE4 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 RNU4-48P-201ENST00000365559 182 ntBASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 RN7SKP267-201ENST00000410381 285 ntBASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 AL591848.1-201ENST00000413092 322 ntBASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 RPS20P5-201ENST00000434808 360 ntBASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 TIMM9P1-201ENST00000436122 256 ntBASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 MRPL50P4-201ENST00000446432 475 ntBASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 AC007016.1-201ENST00000512110 244 ntBASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 AC011979.2-201ENST00000527568 352 ntBASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 AC024224.1-201ENST00000538284 609 ntBASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 RPL21P12-201ENST00000559810 515 ntBASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 AC093249.4-201ENST00000564755 259 ntBASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 AC106785.1-201ENST00000565935 262 ntBASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 UBE2L4-201ENST00000587688 464 ntBASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC87Q9NVE4 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 175.4 ms