Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC096996.1-201ENST00000563813 325 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 AC006272.2-201ENST00000594725 163 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 NANOGP3-201ENST00000605855 286 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 AC002044.1-201ENST00000606707 158 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 AC019193.3-201ENST00000609144 554 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 AC007938.2-201ENST00000604666 2634 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 UBE2L2-201ENST00000254302 429 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 AC138393.1-203ENST00000327086 343 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 AL159987.1-201ENST00000347911 293 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 RNU6-371P-201ENST00000364283 108 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 SNORA63C-201ENST00000364578 129 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 Y_RNA.422-201ENST00000384054 114 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 Y_RNA.473-201ENST00000384333 102 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 RNU6-738P-201ENST00000384531 106 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 AL360182.1-201ENST00000397433 468 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 RN7SKP17-201ENST00000411242 351 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 DPPA2P3-201ENST00000411853 655 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 RPL23AP69-201ENST00000431134 458 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 RPS23P2-201ENST00000463671 415 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 RPS15AP34-201ENST00000487776 387 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 AC009120.1-201ENST00000493458 473 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 AC002456.2-201ENST00000509356 380 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 RNU4ATAC7P-201ENST00000516280 125 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 SNORA70.20-201ENST00000516848 126 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 SNRPGP16-201ENST00000533275 226 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 AC025423.5-201ENST00000550230 219 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 MTCO3P23-201ENST00000561363 289 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 MIR5692A1-201ENST00000580523 69 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 AC002545.1-201ENST00000592511 181 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 AC135068.12-201ENST00000637370 931 ntBASIC4.44□□□□□ -1.7
CCDC140Q96MF4 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
CCDC140Q96MF4 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AC011755.1-201ENST00000623763 2049 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 MTND5P19-201ENST00000424872 1794 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 SNORA33.2-201ENST00000365413 134 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 SNORA22B-201ENST00000383876 138 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 RNU1-136P-201ENST00000384181 164 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 RNU6-310P-201ENST00000384655 107 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 Y_RNA.646-201ENST00000410980 101 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AC063979.1-201ENST00000415539 377 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 E2F6P2-201ENST00000420708 748 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 EI24P4-201ENST00000423683 1078 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AL592045.1-201ENST00000429867 352 ntBASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC140Q96MF4 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms