Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.6□□□□□ -1.99
LMX1AQ8TE12 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC2.6□□□□□ -1.99
LMX1AQ8TE12 AC008494.2-201ENST00000514544 370 ntBASIC2.6□□□□□ -1.99
LMX1AQ8TE12 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC2.6□□□□□ -1.99
LMX1AQ8TE12 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
LMX1AQ8TE12 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
LMX1AQ8TE12 AP002770.2-201ENST00000543613 532 ntBASIC2.6□□□□□ -1.99
LMX1AQ8TE12 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC2.6□□□□□ -1.99
LMX1AQ8TE12 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC2.6□□□□□ -1.99
LMX1AQ8TE12 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC2.6□□□□□ -1.99
LMX1AQ8TE12 MIR3124-201ENST00000582636 67 ntBASIC2.6□□□□□ -1.99
LMX1AQ8TE12 MIR3605-201ENST00000583214 100 ntBASIC2.6□□□□□ -1.99
LMX1AQ8TE12 SNRPGP15-201ENST00000600149 222 ntBASIC2.6□□□□□ -1.99
LMX1AQ8TE12 BX322635.1-201ENST00000605804 496 ntBASIC2.6□□□□□ -1.99
LMX1AQ8TE12 AC005046.1-201ENST00000608515 625 ntBASIC2.6□□□□□ -1.99
LMX1AQ8TE12 AC025016.1-201ENST00000616746 682 ntBASIC2.6□□□□□ -1.99
LMX1AQ8TE12 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.6□□□□□ -1.99
LMX1AQ8TE12 ASNSP3-201ENST00000451989 1306 ntBASIC2.6□□□□□ -1.99
LMX1AQ8TE12 EFTUD1P2-201ENST00000514817 1603 ntBASIC2.6□□□□□ -1.99
LMX1AQ8TE12 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.59□□□□□ -1.99
LMX1AQ8TE12 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
LMX1AQ8TE12 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
LMX1AQ8TE12 SNORD62.1-201ENST00000362541 86 ntBASIC2.59□□□□□ -1.99
LMX1AQ8TE12 RNU6-335P-201ENST00000364563 113 ntBASIC2.59□□□□□ -1.99
LMX1AQ8TE12 BTBD10P2-201ENST00000404779 676 ntBASIC2.59□□□□□ -1.99
LMX1AQ8TE12 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC2.59□□□□□ -1.99
LMX1AQ8TE12 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC2.59□□□□□ -1.99
LMX1AQ8TE12 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC2.59□□□□□ -1.99
LMX1AQ8TE12 VDAC1P3-201ENST00000434069 851 ntBASIC2.59□□□□□ -1.99
LMX1AQ8TE12 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC2.59□□□□□ -1.99
LMX1AQ8TE12 AL513343.1-201ENST00000451818 792 ntBASIC2.59□□□□□ -1.99
LMX1AQ8TE12 RPS3P1-201ENST00000456781 192 ntBASIC2.59□□□□□ -1.99
LMX1AQ8TE12 AC108860.1-201ENST00000484521 383 ntBASIC2.59□□□□□ -1.99
LMX1AQ8TE12 AC104687.1-201ENST00000485829 412 ntBASIC2.59□□□□□ -1.99
LMX1AQ8TE12 RN7SKP244-201ENST00000516513 307 ntBASIC2.59□□□□□ -1.99
LMX1AQ8TE12 AP001646.1-201ENST00000527936 915 ntBASIC2.59□□□□□ -1.99
LMX1AQ8TE12 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC2.59□□□□□ -1.99
LMX1AQ8TE12 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC2.59□□□□□ -1.99
LMX1AQ8TE12 NOP56P3-201ENST00000549457 385 ntBASIC2.59□□□□□ -1.99
LMX1AQ8TE12 OR4T1P-201ENST00000554933 911 ntBASIC2.59□□□□□ -1.99
LMX1AQ8TE12 MIR3945-201ENST00000581853 98 ntBASIC2.59□□□□□ -1.99
LMX1AQ8TE12 MAGOH2P-202ENST00000584384 429 ntBASIC2.59□□□□□ -1.99
LMX1AQ8TE12 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC2.59□□□□□ -1.99
LMX1AQ8TE12 AC016877.3-201ENST00000606778 504 ntBASIC2.59□□□□□ -1.99
LMX1AQ8TE12 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.59□□□□□ -2
LMX1AQ8TE12 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC2.59□□□□□ -2
LMX1AQ8TE12 AC008264.2-201ENST00000610193 3731 ntBASIC2.58□□□□□ -2
LMX1AQ8TE12 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.58□□□□□ -2
LMX1AQ8TE12 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC2.58□□□□□ -2
LMX1AQ8TE12 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
LMX1AQ8TE12 LINC01347-201ENST00000417964 355 ntBASIC2.58□□□□□ -2
LMX1AQ8TE12 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC2.58□□□□□ -2
LMX1AQ8TE12 MYL8P-204ENST00000431574 518 ntBASIC2.58□□□□□ -2
LMX1AQ8TE12 RPS29P6-201ENST00000438196 145 ntBASIC2.58□□□□□ -2
LMX1AQ8TE12 MTND5P8-201ENST00000449817 1083 ntBASIC2.58□□□□□ -2
LMX1AQ8TE12 snoU13.7-201ENST00000459220 104 ntBASIC2.58□□□□□ -2
LMX1AQ8TE12 AC089999.1-201ENST00000460336 374 ntBASIC2.58□□□□□ -2
LMX1AQ8TE12 TRBV12-1-201ENST00000479785 344 ntBASIC2.58□□□□□ -2
LMX1AQ8TE12 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC2.58□□□□□ -2
LMX1AQ8TE12 POU5F1P7-201ENST00000508759 541 ntBASIC2.58□□□□□ -2
LMX1AQ8TE12 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC2.58□□□□□ -2
LMX1AQ8TE12 AC008413.1-201ENST00000511864 177 ntBASIC2.58□□□□□ -2
LMX1AQ8TE12 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC2.58□□□□□ -2
LMX1AQ8TE12 SNORA9.3-201ENST00000516383 129 ntBASIC2.58□□□□□ -2
LMX1AQ8TE12 SNORA31.13-201ENST00000516624 135 ntBASIC2.58□□□□□ -2
LMX1AQ8TE12 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC2.58□□□□□ -2
LMX1AQ8TE12 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC2.58□□□□□ -2
LMX1AQ8TE12 UBTFL10-201ENST00000528532 562 ntBASIC2.58□□□□□ -2
LMX1AQ8TE12 AC004923.2-201ENST00000529649 369 ntBASIC2.58□□□□□ -2
LMX1AQ8TE12 OR4H12P-201ENST00000556269 907 ntBASIC2.58□□□□□ -2
LMX1AQ8TE12 AC090751.1-201ENST00000566966 267 ntBASIC2.58□□□□□ -2
LMX1AQ8TE12 AC106734.1-201ENST00000568646 663 ntBASIC2.58□□□□□ -2
LMX1AQ8TE12 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC2.58□□□□□ -2
LMX1AQ8TE12 MIR4635-201ENST00000583759 79 ntBASIC2.58□□□□□ -2
LMX1AQ8TE12 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.58□□□□□ -2
LMX1AQ8TE12 AC136601.2-201ENST00000604356 474 ntBASIC2.58□□□□□ -2
LMX1AQ8TE12 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
LMX1AQ8TE12 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.58□□□□□ -2
LMX1AQ8TE12 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC2.58□□□□□ -2
LMX1AQ8TE12 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC2.58□□□□□ -2
LMX1AQ8TE12 GABRG2-229ENST00000641017 3628 ntBASIC2.57□□□□□ -2
LMX1AQ8TE12 AL161431.1-201ENST00000618966 4205 ntBASIC2.57□□□□□ -2
LMX1AQ8TE12 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC2.57□□□□□ -2
LMX1AQ8TE12 SNORA51.4-201ENST00000364993 124 ntBASIC2.57□□□□□ -2
LMX1AQ8TE12 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.57□□□□□ -2
LMX1AQ8TE12 MTATP6P31-201ENST00000406985 692 ntBASIC2.57□□□□□ -2
LMX1AQ8TE12 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.57□□□□□ -2
LMX1AQ8TE12 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC2.57□□□□□ -2
LMX1AQ8TE12 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC2.57□□□□□ -2
LMX1AQ8TE12 OOSP1P1-201ENST00000423265 274 ntBASIC2.57□□□□□ -2
LMX1AQ8TE12 OR51AB1P-201ENST00000429046 620 ntBASIC2.57□□□□□ -2
LMX1AQ8TE12 TRIM60P13-201ENST00000432350 1283 ntBASIC2.57□□□□□ -2
LMX1AQ8TE12 ZNF965P-201ENST00000432501 817 ntBASIC2.57□□□□□ -2
LMX1AQ8TE12 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC2.57□□□□□ -2
LMX1AQ8TE12 RPL7P52-201ENST00000449200 742 ntBASIC2.57□□□□□ -2
LMX1AQ8TE12 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC2.57□□□□□ -2
LMX1AQ8TE12 AC093663.2-201ENST00000484625 313 ntBASIC2.57□□□□□ -2
LMX1AQ8TE12 HMGB1P38-201ENST00000490557 577 ntBASIC2.57□□□□□ -2
LMX1AQ8TE12 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.57□□□□□ -2
LMX1AQ8TE12 MTCYBP41-201ENST00000528913 1123 ntBASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms