Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 AC087272.1-201ENST00000523624 533 ntBASIC1.39□□□□□ -2.19
LINC00643Q86TS7 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 MIR5685-201ENST00000579080 79 ntBASIC1.39□□□□□ -2.19
LINC00643Q86TS7 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 BNIP3P11-201ENST00000603878 563 ntBASIC1.39□□□□□ -2.19
LINC00643Q86TS7 AL136295.6-201ENST00000610486 658 ntBASIC1.39□□□□□ -2.19
LINC00643Q86TS7 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 UBE2Q2P2-203ENST00000613592 761 ntBASIC1.39□□□□□ -2.19
LINC00643Q86TS7 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 AC091953.3-201ENST00000623220 236 ntBASIC1.39□□□□□ -2.19
LINC00643Q86TS7 AL160394.1-201ENST00000624765 724 ntBASIC1.39□□□□□ -2.19
LINC00643Q86TS7 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 MTND4P27-201ENST00000450813 1354 ntBASIC1.38□□□□□ -2.19
LINC00643Q86TS7 ZNF37BP-203ENST00000452306 1352 ntBASIC1.38□□□□□ -2.19
LINC00643Q86TS7 AC087565.3-202ENST00000642085 1603 ntBASIC1.38□□□□□ -2.19
LINC00643Q86TS7 RNA5SP160-201ENST00000364866 120 ntBASIC1.38□□□□□ -2.19
LINC00643Q86TS7 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC1.38□□□□□ -2.19
LINC00643Q86TS7 AC234772.1-201ENST00000377927 937 ntBASIC1.38□□□□□ -2.19
LINC00643Q86TS7 OR5H15-201ENST00000383696 930 ntBASIC1.38□□□□□ -2.19
LINC00643Q86TS7 AL035419.1-201ENST00000397037 564 ntBASIC1.38□□□□□ -2.19
LINC00643Q86TS7 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
LINC00643Q86TS7 RPL7P30-201ENST00000420888 709 ntBASIC1.38□□□□□ -2.19
LINC00643Q86TS7 RPL31P63-201ENST00000422565 375 ntBASIC1.38□□□□□ -2.19
LINC00643Q86TS7 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
LINC00643Q86TS7 AC022018.1-201ENST00000430685 241 ntBASIC1.38□□□□□ -2.19
LINC00643Q86TS7 RAB6C-AS1-202ENST00000433431 123 ntBASIC1.38□□□□□ -2.19
LINC00643Q86TS7 AC005019.1-201ENST00000436455 431 ntBASIC1.38□□□□□ -2.19
LINC00643Q86TS7 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC1.38□□□□□ -2.19
LINC00643Q86TS7 AC112492.1-201ENST00000449607 712 ntBASIC1.38□□□□□ -2.19
LINC00643Q86TS7 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC1.38□□□□□ -2.19
LINC00643Q86TS7 RPL7P61-201ENST00000451721 751 ntBASIC1.38□□□□□ -2.19
LINC00643Q86TS7 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC1.38□□□□□ -2.19
LINC00643Q86TS7 AC092155.2-201ENST00000454675 477 ntBASIC1.38□□□□□ -2.19
LINC00643Q86TS7 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC1.38□□□□□ -2.19
LINC00643Q86TS7 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC1.38□□□□□ -2.19
LINC00643Q86TS7 AC243972.3-201ENST00000539655 198 ntBASIC1.38□□□□□ -2.19
LINC00643Q86TS7 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC1.38□□□□□ -2.19
LINC00643Q86TS7 AC010546.1-201ENST00000569391 485 ntBASIC1.38□□□□□ -2.19
LINC00643Q86TS7 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC1.38□□□□□ -2.19
LINC00643Q86TS7 AC015982.1-201ENST00000608113 465 ntBASIC1.38□□□□□ -2.19
LINC00643Q86TS7 AC104307.1-201ENST00000616142 196 ntBASIC1.38□□□□□ -2.19
LINC00643Q86TS7 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC1.38□□□□□ -2.19
LINC00643Q86TS7 AC009093.8-201ENST00000641769 292 ntBASIC1.38□□□□□ -2.19
LINC00643Q86TS7 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC1.38□□□□□ -2.19
LINC00643Q86TS7 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC1.38□□□□□ -2.19
LINC00643Q86TS7 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
LINC00643Q86TS7 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC1.37□□□□□ -2.19
LINC00643Q86TS7 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
LINC00643Q86TS7 SNORD62.1-201ENST00000362541 86 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 SNORA1.3-201ENST00000384676 136 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 MIR218-2-201ENST00000385006 110 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC1.37□□□□□ -2.19
LINC00643Q86TS7 RNU2-21P-201ENST00000410368 188 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 RNA5SP489-201ENST00000410986 109 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1.37□□□□□ -2.19
LINC00643Q86TS7 NUP35P2-201ENST00000416748 943 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 AL356320.2-201ENST00000417263 507 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 AL590762.4-201ENST00000425885 253 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 MTATP6P11-201ENST00000428071 670 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
LINC00643Q86TS7 OSTCP8-201ENST00000445117 448 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
LINC00643Q86TS7 TPT1P14-201ENST00000448018 505 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC1.37□□□□□ -2.19
LINC00643Q86TS7 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC1.37□□□□□ -2.19
LINC00643Q86TS7 RPL7P19-201ENST00000469948 618 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 AC128713.1-201ENST00000471495 306 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 RPL23AP41-201ENST00000484754 458 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 OR4G11P-201ENST00000492842 939 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 NDUFB4P2-201ENST00000509515 391 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 HMGN1P15-201ENST00000513870 295 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 BTF3P12-201ENST00000519620 469 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 IGLV2-28-201ENST00000520681 304 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 AC022634.1-201ENST00000520765 532 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC1.37□□□□□ -2.19
LINC00643Q86TS7 RGS5-218ENST00000526176 574 ntTSL 4 BASIC1.37□□□□□ -2.19
LINC00643Q86TS7 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC1.37□□□□□ -2.19
LINC00643Q86TS7 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC1.37□□□□□ -2.19
LINC00643Q86TS7 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.37□□□□□ -2.19
LINC00643Q86TS7 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC1.37□□□□□ -2.19
LINC00643Q86TS7 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC1.37□□□□□ -2.19
LINC00643Q86TS7 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC1.37□□□□□ -2.19
LINC00643Q86TS7 AP004372.1-201ENST00000604842 844 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 AC107294.1-201ENST00000609524 467 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 AP001486.3-201ENST00000615334 372 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 MIR6875-201ENST00000617506 72 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 MIR6766-201ENST00000622641 72 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 AC095031.1-201ENST00000623685 672 ntBASIC1.37□□□□□ -2.19
LINC00643Q86TS7 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC1.37□□□□□ -2.19
LINC00643Q86TS7 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.37□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms