Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 RNU6-1252P-201ENST00000363054 104 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 RNU6-128P-201ENST00000383976 107 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 RNU6-432P-201ENST00000384196 109 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 RNU1-77P-201ENST00000390868 162 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 RNU6-754P-201ENST00000391166 107 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 SOD2P1-201ENST00000396543 562 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 ADAM24P-201ENST00000398655 2101 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AL109755.1-201ENST00000401791 649 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 RNA5SP107-201ENST00000411358 122 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 RNU6-516P-201ENST00000411381 104 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 GABPAP-201ENST00000419271 1356 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 RPL21P112-201ENST00000434403 463 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 CYCSP12-201ENST00000437729 300 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 GAPDHP25-201ENST00000447061 1001 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 TRBV1-201ENST00000476502 284 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AC106872.2-201ENST00000494303 480 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AC097473.1-201ENST00000508142 408 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 SSX6-203ENST00000509958 336 ntTSL 3 BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 RANP3-201ENST00000530970 276 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AP002404.1-201ENST00000532005 451 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AL133271.1-201ENST00000538229 291 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 USP44-208ENST00000552440 1818 ntTSL 5 BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AC008269.2-201ENST00000561915 1105 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AC018552.1-201ENST00000562099 811 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AC010653.1-201ENST00000571108 881 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 MIR4293-201ENST00000584305 78 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AC007566.2-201ENST00000603642 413 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AL670379.6-201ENST00000603753 252 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AC008162.1-201ENST00000604718 254 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AL670379.1-201ENST00000604752 252 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AL670379.5-201ENST00000605253 252 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AL670379.8-201ENST00000605353 252 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AL670379.7-201ENST00000605823 252 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AC116447.1-201ENST00000613153 453 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AL136313.1-201ENST00000624804 202 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 AL669831.3-213ENST00000636676 183 ntBASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 MAPK10-338ENST00000641647 3362 ntBASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 KPNA2P1-201ENST00000458289 1591 ntBASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 AP000756.2-201ENST00000624168 2567 ntBASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 Y_RNA.176-201ENST00000363815 109 ntBASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 SNORA75B-201ENST00000384053 137 ntBASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 SNORD3H-201ENST00000384486 214 ntBASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 RNU6-550P-201ENST00000391057 101 ntBASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 U3.25-201ENST00000391209 220 ntBASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 RPL7AP49-201ENST00000429522 581 ntBASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 CBX3P6-201ENST00000430257 527 ntBASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 AL591438.1-201ENST00000433508 581 ntBASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 AL162388.1-201ENST00000450912 352 ntBASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 AC010733.1-201ENST00000451515 401 ntBASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 RN7SL432P-201ENST00000484057 298 ntBASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 AL136038.1-201ENST00000497246 351 ntBASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 MEPE-206ENST00000511670 550 ntTSL 4 BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 RNU6-685P-201ENST00000517088 95 ntBASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 SETP7-201ENST00000552169 453 ntBASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 MTCO3P23-201ENST00000561363 289 ntBASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 192.4 ms