Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
USP43Q70EL4 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
USP43Q70EL4 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC3.8□□□□□ -1.8
USP43Q70EL4 AL136964.1-201ENST00000622038 2990 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 MTND4P12-201ENST00000498999 1377 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.79□□□□□ -1.8
USP43Q70EL4 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
USP43Q70EL4 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
USP43Q70EL4 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC3.79□□□□□ -1.8
USP43Q70EL4 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
USP43Q70EL4 SNORA37-201ENST00000384504 129 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 RNU6-253P-201ENST00000384730 105 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 AL356057.2-201ENST00000403318 432 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 RN7SKP177-201ENST00000410567 355 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 AC092745.2-202ENST00000411880 369 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 TPT1P2-201ENST00000413105 503 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 RPL30P2-201ENST00000414021 291 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.79□□□□□ -1.8
USP43Q70EL4 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
USP43Q70EL4 AC048351.1-201ENST00000420064 602 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC3.79□□□□□ -1.8
USP43Q70EL4 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
USP43Q70EL4 AL356387.2-201ENST00000422272 243 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 AC012498.1-201ENST00000424037 437 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 GAS5-208ENST00000425771 242 ntTSL 3 BASIC3.79□□□□□ -1.8
USP43Q70EL4 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.79□□□□□ -1.8
USP43Q70EL4 AC073614.1-201ENST00000438690 650 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 RPL23AP93-201ENST00000440847 484 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 AC114495.1-201ENST00000441274 436 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
USP43Q70EL4 RPL36AP33-201ENST00000450395 310 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC3.79□□□□□ -1.8
USP43Q70EL4 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC3.79□□□□□ -1.8
USP43Q70EL4 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.79□□□□□ -1.8
USP43Q70EL4 RPL23AP24-201ENST00000458203 385 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 RNA5SP269-201ENST00000459032 137 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.79□□□□□ -1.8
USP43Q70EL4 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
USP43Q70EL4 BTF3L4P4-201ENST00000506381 449 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC3.79□□□□□ -1.8
USP43Q70EL4 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.79□□□□□ -1.8
USP43Q70EL4 AC025674.1-201ENST00000507074 324 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 NDUFB4P9-201ENST00000511646 388 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 RNU6-416P-201ENST00000516265 103 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.79□□□□□ -1.8
USP43Q70EL4 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.79□□□□□ -1.8
USP43Q70EL4 AC007224.1-201ENST00000564410 144 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.79□□□□□ -1.8
USP43Q70EL4 MIR4512-201ENST00000583257 77 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 KPNA2P3-201ENST00000584190 848 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC3.79□□□□□ -1.8
USP43Q70EL4 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.79□□□□□ -1.8
USP43Q70EL4 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC3.79□□□□□ -1.8
USP43Q70EL4 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC3.79□□□□□ -1.8
USP43Q70EL4 AP000942.4-201ENST00000604811 241 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3.79□□□□□ -1.8
USP43Q70EL4 AC106028.5-201ENST00000610332 395 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC3.79□□□□□ -1.8
USP43Q70EL4 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.79□□□□□ -1.8
USP43Q70EL4 FAM157B-203ENST00000639350 358 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 OR52H1-202ENST00000641796 1061 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
USP43Q70EL4 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
USP43Q70EL4 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
USP43Q70EL4 AL353743.4-201ENST00000422653 1547 ntBASIC3.79□□□□□ -1.8
USP43Q70EL4 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
USP43Q70EL4 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
USP43Q70EL4 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
USP43Q70EL4 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
USP43Q70EL4 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
USP43Q70EL4 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
USP43Q70EL4 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
USP43Q70EL4 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
USP43Q70EL4 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
USP43Q70EL4 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
USP43Q70EL4 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
USP43Q70EL4 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.78□□□□□ -1.8
USP43Q70EL4 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
USP43Q70EL4 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
USP43Q70EL4 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
USP43Q70EL4 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.78□□□□□ -1.8
USP43Q70EL4 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
USP43Q70EL4 AC021146.4-201ENST00000309229 279 ntBASIC3.78□□□□□ -1.8
USP43Q70EL4 CBX3P1-201ENST00000325243 554 ntBASIC3.78□□□□□ -1.8
USP43Q70EL4 Y_RNA.38-201ENST00000362617 102 ntBASIC3.78□□□□□ -1.8
USP43Q70EL4 RNU1-85P-201ENST00000364127 164 ntBASIC3.78□□□□□ -1.8
USP43Q70EL4 Y_RNA.311-201ENST00000365068 96 ntBASIC3.78□□□□□ -1.8
USP43Q70EL4 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.78□□□□□ -1.8
USP43Q70EL4 RNU6-77P-201ENST00000410554 91 ntBASIC3.78□□□□□ -1.8
USP43Q70EL4 RPS15AP38-201ENST00000413110 372 ntBASIC3.78□□□□□ -1.8
USP43Q70EL4 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC3.78□□□□□ -1.8
USP43Q70EL4 RPL23AP39-201ENST00000415533 405 ntBASIC3.78□□□□□ -1.8
USP43Q70EL4 MTCYBP24-201ENST00000420387 1106 ntBASIC3.78□□□□□ -1.8
USP43Q70EL4 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
USP43Q70EL4 EIF1P3-201ENST00000423841 334 ntBASIC3.78□□□□□ -1.8
USP43Q70EL4 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC3.78□□□□□ -1.8
USP43Q70EL4 BLOC1S2P1-201ENST00000428431 301 ntBASIC3.78□□□□□ -1.8
USP43Q70EL4 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC3.78□□□□□ -1.8
USP43Q70EL4 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 129.1 ms