Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
CHD9Q3L8U1 AC012078.1-201ENST00000405035 1646 ntBASIC2.15□□□□□ -2.06
CHD9Q3L8U1 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
CHD9Q3L8U1 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC2.15□□□□□ -2.06
CHD9Q3L8U1 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.15□□□□□ -2.06
CHD9Q3L8U1 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
CHD9Q3L8U1 RNU2-6P-201ENST00000411404 190 ntBASIC2.15□□□□□ -2.07
CHD9Q3L8U1 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC2.15□□□□□ -2.07
CHD9Q3L8U1 AC091046.2-201ENST00000620775 665 ntBASIC2.15□□□□□ -2.07
CHD9Q3L8U1 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
CHD9Q3L8U1 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.15□□□□□ -2.07
CHD9Q3L8U1 RNU2-68P-201ENST00000410878 191 ntBASIC2.15□□□□□ -2.07
CHD9Q3L8U1 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC2.15□□□□□ -2.07
CHD9Q3L8U1 NDUFA5P4-201ENST00000436704 385 ntBASIC2.15□□□□□ -2.07
CHD9Q3L8U1 RPL23AP58-201ENST00000440453 469 ntBASIC2.15□□□□□ -2.07
CHD9Q3L8U1 MTAPP1-201ENST00000489154 819 ntBASIC2.15□□□□□ -2.07
CHD9Q3L8U1 RPL23AP63-201ENST00000498752 471 ntBASIC2.15□□□□□ -2.07
CHD9Q3L8U1 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC2.15□□□□□ -2.07
CHD9Q3L8U1 IGLVIV-66-1-201ENST00000521832 460 ntBASIC2.15□□□□□ -2.07
CHD9Q3L8U1 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC2.15□□□□□ -2.07
CHD9Q3L8U1 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC2.15□□□□□ -2.07
CHD9Q3L8U1 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
CHD9Q3L8U1 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC2.14□□□□□ -2.07
CHD9Q3L8U1 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
CHD9Q3L8U1 AL136964.1-201ENST00000622038 2990 ntBASIC2.14□□□□□ -2.07
CHD9Q3L8U1 AP005901.5-201ENST00000545779 1796 ntBASIC2.14□□□□□ -2.07
CHD9Q3L8U1 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
CHD9Q3L8U1 SNORD21-201ENST00000383953 95 ntBASIC2.14□□□□□ -2.07
CHD9Q3L8U1 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.14□□□□□ -2.07
CHD9Q3L8U1 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.14□□□□□ -2.07
CHD9Q3L8U1 HMGB3P8-201ENST00000449709 577 ntBASIC2.14□□□□□ -2.07
CHD9Q3L8U1 RPS27P29-201ENST00000463110 252 ntBASIC2.14□□□□□ -2.07
CHD9Q3L8U1 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC2.14□□□□□ -2.07
CHD9Q3L8U1 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC2.14□□□□□ -2.07
CHD9Q3L8U1 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC2.14□□□□□ -2.07
CHD9Q3L8U1 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.14□□□□□ -2.07
CHD9Q3L8U1 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.14□□□□□ -2.07
CHD9Q3L8U1 XPOTP1-201ENST00000443317 2398 ntBASIC2.14□□□□□ -2.07
CHD9Q3L8U1 RAD1P1-201ENST00000231383 813 ntBASIC2.14□□□□□ -2.07
CHD9Q3L8U1 RPS12P5-201ENST00000423449 371 ntBASIC2.14□□□□□ -2.07
CHD9Q3L8U1 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.14□□□□□ -2.07
CHD9Q3L8U1 AC080013.2-201ENST00000460866 323 ntBASIC2.14□□□□□ -2.07
CHD9Q3L8U1 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.14□□□□□ -2.07
CHD9Q3L8U1 IGLVIV-53-201ENST00000520107 367 ntBASIC2.14□□□□□ -2.07
CHD9Q3L8U1 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.13□□□□□ -2.07
CHD9Q3L8U1 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
CHD9Q3L8U1 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
CHD9Q3L8U1 U8.8-201ENST00000365399 135 ntBASIC2.13□□□□□ -2.07
CHD9Q3L8U1 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC2.13□□□□□ -2.07
CHD9Q3L8U1 OR5D17P-201ENST00000531492 978 ntBASIC2.13□□□□□ -2.07
CHD9Q3L8U1 AP000889.2-201ENST00000532684 490 ntBASIC2.13□□□□□ -2.07
CHD9Q3L8U1 RPL23AP61-201ENST00000623642 466 ntBASIC2.13□□□□□ -2.07
CHD9Q3L8U1 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
CHD9Q3L8U1 AL139811.1-201ENST00000424779 2299 ntBASIC2.13□□□□□ -2.07
CHD9Q3L8U1 KPNA2P1-201ENST00000458289 1591 ntBASIC2.13□□□□□ -2.07
CHD9Q3L8U1 ZNF355P-201ENST00000427301 3216 ntBASIC2.13□□□□□ -2.07
CHD9Q3L8U1 MTND5P23-201ENST00000430812 1655 ntBASIC2.13□□□□□ -2.07
CHD9Q3L8U1 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
CHD9Q3L8U1 ANKRD62P1-201ENST00000434304 1623 ntBASIC2.13□□□□□ -2.07
CHD9Q3L8U1 RPS7P9-201ENST00000414704 586 ntBASIC2.13□□□□□ -2.07
CHD9Q3L8U1 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC2.13□□□□□ -2.07
CHD9Q3L8U1 RNU7-95P-201ENST00000459222 64 ntBASIC2.13□□□□□ -2.07
CHD9Q3L8U1 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC2.13□□□□□ -2.07
CHD9Q3L8U1 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.13□□□□□ -2.07
CHD9Q3L8U1 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.13□□□□□ -2.07
CHD9Q3L8U1 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
CHD9Q3L8U1 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.12□□□□□ -2.07
CHD9Q3L8U1 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.12□□□□□ -2.07
CHD9Q3L8U1 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC2.12□□□□□ -2.07
CHD9Q3L8U1 AC090543.1-201ENST00000492168 485 ntBASIC2.12□□□□□ -2.07
CHD9Q3L8U1 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC2.12□□□□□ -2.07
CHD9Q3L8U1 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.12□□□□□ -2.07
CHD9Q3L8U1 AC002076.2-201ENST00000617362 122 ntBASIC2.12□□□□□ -2.07
CHD9Q3L8U1 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.12□□□□□ -2.07
CHD9Q3L8U1 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.12□□□□□ -2.07
CHD9Q3L8U1 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC2.12□□□□□ -2.07
CHD9Q3L8U1 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
CHD9Q3L8U1 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.12□□□□□ -2.07
CHD9Q3L8U1 AMD1P2-201ENST00000412936 992 ntBASIC2.12□□□□□ -2.07
CHD9Q3L8U1 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC2.12□□□□□ -2.07
CHD9Q3L8U1 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC2.12□□□□□ -2.07
CHD9Q3L8U1 DNAJC19P4-201ENST00000440115 345 ntBASIC2.12□□□□□ -2.07
CHD9Q3L8U1 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC2.12□□□□□ -2.07
CHD9Q3L8U1 RPL23AP14-201ENST00000468281 468 ntBASIC2.12□□□□□ -2.07
CHD9Q3L8U1 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC2.12□□□□□ -2.07
CHD9Q3L8U1 MIR8081-201ENST00000611533 95 ntBASIC2.12□□□□□ -2.07
CHD9Q3L8U1 AC009501.3-201ENST00000605001 1352 ntBASIC2.12□□□□□ -2.07
CHD9Q3L8U1 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.12□□□□□ -2.07
CHD9Q3L8U1 RNU6-250P-201ENST00000516958 103 ntBASIC2.12□□□□□ -2.07
CHD9Q3L8U1 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC2.12□□□□□ -2.07
CHD9Q3L8U1 ELOCP31-201ENST00000540463 467 ntBASIC2.12□□□□□ -2.07
CHD9Q3L8U1 AP005136.1-201ENST00000579765 429 ntBASIC2.12□□□□□ -2.07
CHD9Q3L8U1 MIR7153-201ENST00000637758 57 ntBASIC2.12□□□□□ -2.07
CHD9Q3L8U1 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC2.11□□□□□ -2.07
CHD9Q3L8U1 RNU1-138P-201ENST00000384093 164 ntBASIC2.11□□□□□ -2.07
CHD9Q3L8U1 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC2.11□□□□□ -2.07
CHD9Q3L8U1 RPS15AP12-201ENST00000419498 388 ntBASIC2.11□□□□□ -2.07
CHD9Q3L8U1 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC2.11□□□□□ -2.07
CHD9Q3L8U1 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.11□□□□□ -2.07
CHD9Q3L8U1 RNA5SP182-201ENST00000516064 82 ntBASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms