Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AL359535.1-201ENST00000612100 1087 ntBASIC2.39□□□□□ -2.03
FOXF1Q12946 AC090617.9-201ENST00000623751 147 ntBASIC2.39□□□□□ -2.03
FOXF1Q12946 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC2.39□□□□□ -2.03
FOXF1Q12946 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
FOXF1Q12946 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
FOXF1Q12946 AC092435.3-201ENST00000565538 3654 ntBASIC2.39□□□□□ -2.03
FOXF1Q12946 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
FOXF1Q12946 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC2.38□□□□□ -2.03
FOXF1Q12946 SNORA25.6-201ENST00000364121 118 ntBASIC2.38□□□□□ -2.03
FOXF1Q12946 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
FOXF1Q12946 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
FOXF1Q12946 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC2.38□□□□□ -2.03
FOXF1Q12946 MIR34A-201ENST00000385130 110 ntBASIC2.38□□□□□ -2.03
FOXF1Q12946 AGR3-202ENST00000402239 563 ntTSL 2 BASIC2.38□□□□□ -2.03
FOXF1Q12946 MTATP6P31-201ENST00000406985 692 ntBASIC2.38□□□□□ -2.03
FOXF1Q12946 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC2.38□□□□□ -2.03
FOXF1Q12946 AC104332.2-201ENST00000429959 156 ntBASIC2.38□□□□□ -2.03
FOXF1Q12946 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC2.38□□□□□ -2.03
FOXF1Q12946 Z77249.1-201ENST00000444622 1175 ntBASIC2.38□□□□□ -2.03
FOXF1Q12946 RPL23AP20-201ENST00000447965 421 ntBASIC2.38□□□□□ -2.03
FOXF1Q12946 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.38□□□□□ -2.03
FOXF1Q12946 AL049873.1-201ENST00000480540 376 ntBASIC2.38□□□□□ -2.03
FOXF1Q12946 HMGB3P15-201ENST00000507326 574 ntBASIC2.38□□□□□ -2.03
FOXF1Q12946 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC2.38□□□□□ -2.03
FOXF1Q12946 SETP12-201ENST00000514068 805 ntBASIC2.38□□□□□ -2.03
FOXF1Q12946 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC2.38□□□□□ -2.03
FOXF1Q12946 HMGB1P41-201ENST00000520234 440 ntBASIC2.38□□□□□ -2.03
FOXF1Q12946 AC026616.1-201ENST00000523157 525 ntBASIC2.38□□□□□ -2.03
FOXF1Q12946 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
FOXF1Q12946 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC2.38□□□□□ -2.03
FOXF1Q12946 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC2.38□□□□□ -2.03
FOXF1Q12946 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.38□□□□□ -2.03
FOXF1Q12946 HMGB1P6-201ENST00000569046 646 ntBASIC2.38□□□□□ -2.03
FOXF1Q12946 AC018618.2-201ENST00000604770 446 ntBASIC2.38□□□□□ -2.03
FOXF1Q12946 AC006023.2-201ENST00000609916 167 ntBASIC2.38□□□□□ -2.03
FOXF1Q12946 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC2.38□□□□□ -2.03
FOXF1Q12946 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC2.38□□□□□ -2.03
FOXF1Q12946 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC2.38□□□□□ -2.03
FOXF1Q12946 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
FOXF1Q12946 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
FOXF1Q12946 HSP90AA4P-202ENST00000506915 2228 ntBASIC2.38□□□□□ -2.03
FOXF1Q12946 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
FOXF1Q12946 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.38□□□□□ -2.03
FOXF1Q12946 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC2.38□□□□□ -2.03
FOXF1Q12946 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC2.37□□□□□ -2.03
FOXF1Q12946 AC009501.3-201ENST00000605001 1352 ntBASIC2.37□□□□□ -2.03
FOXF1Q12946 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC2.37□□□□□ -2.03
FOXF1Q12946 AC062016.1-201ENST00000355719 319 ntBASIC2.37□□□□□ -2.03
FOXF1Q12946 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC2.37□□□□□ -2.03
FOXF1Q12946 SNORD62.1-201ENST00000362541 86 ntBASIC2.37□□□□□ -2.03
FOXF1Q12946 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC2.37□□□□□ -2.03
FOXF1Q12946 RNU6-1293P-201ENST00000384077 107 ntBASIC2.37□□□□□ -2.03
FOXF1Q12946 RNA5SP210-201ENST00000391034 120 ntBASIC2.37□□□□□ -2.03
FOXF1Q12946 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
FOXF1Q12946 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
FOXF1Q12946 NPM1P10-201ENST00000398310 865 ntBASIC2.37□□□□□ -2.03
FOXF1Q12946 BTBD10P2-201ENST00000404779 676 ntBASIC2.37□□□□□ -2.03
FOXF1Q12946 MIR1250-201ENST00000408098 113 ntBASIC2.37□□□□□ -2.03
FOXF1Q12946 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.37□□□□□ -2.03
FOXF1Q12946 AC244098.2-201ENST00000422068 99 ntBASIC2.37□□□□□ -2.03
FOXF1Q12946 AC019097.1-201ENST00000424783 735 ntBASIC2.37□□□□□ -2.03
FOXF1Q12946 AC063976.3-201ENST00000426849 329 ntBASIC2.37□□□□□ -2.03
FOXF1Q12946 OR51AB1P-201ENST00000429046 620 ntBASIC2.37□□□□□ -2.03
FOXF1Q12946 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.37□□□□□ -2.03
FOXF1Q12946 AC005002.1-201ENST00000447458 540 ntBASIC2.37□□□□□ -2.03
FOXF1Q12946 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC2.37□□□□□ -2.03
FOXF1Q12946 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC2.37□□□□□ -2.03
FOXF1Q12946 SRIP1-201ENST00000489235 288 ntBASIC2.37□□□□□ -2.03
FOXF1Q12946 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC2.37□□□□□ -2.03
FOXF1Q12946 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC2.37□□□□□ -2.03
FOXF1Q12946 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC2.37□□□□□ -2.03
FOXF1Q12946 AC008494.2-201ENST00000514544 370 ntBASIC2.37□□□□□ -2.03
FOXF1Q12946 HIGD1AP3-201ENST00000515857 278 ntBASIC2.37□□□□□ -2.03
FOXF1Q12946 AC025881.1-201ENST00000518851 512 ntBASIC2.37□□□□□ -2.03
FOXF1Q12946 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.37□□□□□ -2.03
FOXF1Q12946 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC2.37□□□□□ -2.03
FOXF1Q12946 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC2.37□□□□□ -2.03
FOXF1Q12946 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.37□□□□□ -2.03
FOXF1Q12946 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC2.37□□□□□ -2.03
FOXF1Q12946 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC2.37□□□□□ -2.03
FOXF1Q12946 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC2.37□□□□□ -2.03
FOXF1Q12946 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
FOXF1Q12946 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC2.37□□□□□ -2.03
FOXF1Q12946 AC104307.1-201ENST00000616142 196 ntBASIC2.37□□□□□ -2.03
FOXF1Q12946 RNU6-156P-201ENST00000621869 107 ntBASIC2.37□□□□□ -2.03
FOXF1Q12946 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.37□□□□□ -2.03
FOXF1Q12946 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
FOXF1Q12946 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
FOXF1Q12946 AP000526.1-201ENST00000603308 1388 ntBASIC2.36□□□□□ -2.03
FOXF1Q12946 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.36□□□□□ -2.03
FOXF1Q12946 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
FOXF1Q12946 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
FOXF1Q12946 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
FOXF1Q12946 OR5T3-201ENST00000303059 1023 ntBASIC2.36□□□□□ -2.03
FOXF1Q12946 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
FOXF1Q12946 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
FOXF1Q12946 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
FOXF1Q12946 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC2.36□□□□□ -2.03
FOXF1Q12946 AL139039.1-201ENST00000401900 692 ntBASIC2.36□□□□□ -2.03
FOXF1Q12946 AL139095.1-201ENST00000404326 391 ntBASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms