Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 Y_RNA.436-201ENST00000384097 102 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
COL4A4P53420 RNU6-192P-201ENST00000391253 100 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 MIR1183-201ENST00000408856 89 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC3.01□□□□□ -1.93
COL4A4P53420 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC3.01□□□□□ -1.93
COL4A4P53420 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.01□□□□□ -1.93
COL4A4P53420 AL031736.2-201ENST00000426573 787 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 VDAC1P3-201ENST00000434069 851 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC3.01□□□□□ -1.93
COL4A4P53420 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC3.01□□□□□ -1.93
COL4A4P53420 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC3.01□□□□□ -1.93
COL4A4P53420 AL590639.1-201ENST00000456484 337 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
COL4A4P53420 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.01□□□□□ -1.93
COL4A4P53420 MTND1P5-201ENST00000517906 940 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC3.01□□□□□ -1.93
COL4A4P53420 AC104115.2-201ENST00000523026 687 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 MTCYBP20-201ENST00000524239 1129 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.01□□□□□ -1.93
COL4A4P53420 AC118942.1-201ENST00000529674 1035 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC3.01□□□□□ -1.93
COL4A4P53420 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC3.01□□□□□ -1.93
COL4A4P53420 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC3.01□□□□□ -1.93
COL4A4P53420 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC3.01□□□□□ -1.93
COL4A4P53420 OR4U1P-201ENST00000554958 912 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC3.01□□□□□ -1.93
COL4A4P53420 AC234775.3-201ENST00000564612 656 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 AC109446.2-201ENST00000567872 497 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.01□□□□□ -1.93
COL4A4P53420 AL358072.1-201ENST00000604156 575 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 AL139344.1-201ENST00000605228 195 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 AC012213.4-201ENST00000606457 354 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 AC021755.4-201ENST00000616620 456 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.01□□□□□ -1.93
COL4A4P53420 NR1H5P-201ENST00000452683 1377 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.01□□□□□ -1.93
COL4A4P53420 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
COL4A4P53420 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
COL4A4P53420 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
COL4A4P53420 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
COL4A4P53420 MTND5P19-201ENST00000424872 1794 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 Y_RNA.4-201ENST00000362333 112 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 U8.2-201ENST00000363156 134 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 RNU5E-10P-201ENST00000363506 118 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
COL4A4P53420 Y_RNA.505-201ENST00000384489 102 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 SNORA70E-201ENST00000384492 135 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 RN7SKP223-201ENST00000410582 62 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 AC022028.1-201ENST00000412054 408 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC3.01□□□□□ -1.93
COL4A4P53420 AL512504.1-201ENST00000415494 778 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 MTND4LP13-201ENST00000425022 298 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 RPS3AP44-201ENST00000425466 790 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 AC013262.1-201ENST00000426710 252 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.01□□□□□ -1.93
COL4A4P53420 ELOCP30-201ENST00000447108 299 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 AC003982.1-202ENST00000469928 248 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 RPS26P24-201ENST00000497656 331 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.01□□□□□ -1.93
COL4A4P53420 NAMPTP2-201ENST00000505629 1115 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 AC010468.3-201ENST00000508225 458 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 AC121161.1-201ENST00000510606 652 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.01□□□□□ -1.93
COL4A4P53420 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.01□□□□□ -1.93
COL4A4P53420 AC011352.1-201ENST00000512300 793 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC3.01□□□□□ -1.93
COL4A4P53420 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.01□□□□□ -1.93
COL4A4P53420 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC3.01□□□□□ -1.93
COL4A4P53420 AP000873.5-201ENST00000533906 236 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC3.01□□□□□ -1.93
COL4A4P53420 AL132857.1-201ENST00000555180 708 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.01□□□□□ -1.93
COL4A4P53420 MIR6817-201ENST00000615588 66 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC3.01□□□□□ -1.93
COL4A4P53420 AC104985.3-201ENST00000623479 597 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 MIR3974-201ENST00000637126 96 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 AC006927.2-201ENST00000639256 389 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 BX649567.1-201ENST00000642071 1134 ntBASIC3.01□□□□□ -1.93
COL4A4P53420 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC3.01□□□□□ -1.93
COL4A4P53420 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
COL4A4P53420 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC3□□□□□ -1.93
COL4A4P53420 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC3□□□□□ -1.93
COL4A4P53420 RNU6-648P-201ENST00000410190 107 ntBASIC3□□□□□ -1.93
COL4A4P53420 RNA5SP274-201ENST00000410484 108 ntBASIC3□□□□□ -1.93
COL4A4P53420 RN7SKP192-201ENST00000411291 327 ntBASIC3□□□□□ -1.93
COL4A4P53420 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC3□□□□□ -1.93
COL4A4P53420 TRGV5P-201ENST00000419915 354 ntBASIC3□□□□□ -1.93
COL4A4P53420 MTND2P18-201ENST00000419962 1030 ntBASIC3□□□□□ -1.93
COL4A4P53420 AC013268.2-201ENST00000420753 337 ntBASIC3□□□□□ -1.93
COL4A4P53420 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC3□□□□□ -1.93
COL4A4P53420 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3□□□□□ -1.93
COL4A4P53420 WASF1P1-201ENST00000447560 1131 ntBASIC3□□□□□ -1.93
COL4A4P53420 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC3□□□□□ -1.93
COL4A4P53420 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3□□□□□ -1.93
COL4A4P53420 AC090525.1-201ENST00000479116 478 ntBASIC3□□□□□ -1.93
COL4A4P53420 AP004217.1-201ENST00000480579 346 ntBASIC3□□□□□ -1.93
COL4A4P53420 AC008427.1-201ENST00000503102 655 ntBASIC3□□□□□ -1.93
COL4A4P53420 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms