Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.41□□□□□ -1.54
LIG3P49916 ARL5AP1-201ENST00000418991 388 ntBASIC5.41□□□□□ -1.54
LIG3P49916 RPL30P3-201ENST00000424262 333 ntBASIC5.41□□□□□ -1.54
LIG3P49916 AL353729.1-201ENST00000425044 720 ntBASIC5.41□□□□□ -1.54
LIG3P49916 AC092162.1-201ENST00000432828 434 ntBASIC5.41□□□□□ -1.54
LIG3P49916 RPL35AP22-201ENST00000436855 335 ntBASIC5.41□□□□□ -1.54
LIG3P49916 TRAPPC2P3-201ENST00000443200 321 ntBASIC5.41□□□□□ -1.54
LIG3P49916 BTF3P6-201ENST00000448054 499 ntBASIC5.41□□□□□ -1.54
LIG3P49916 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC5.41□□□□□ -1.54
LIG3P49916 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC5.41□□□□□ -1.54
LIG3P49916 RPL36AP13-201ENST00000457490 317 ntBASIC5.41□□□□□ -1.54
LIG3P49916 RNU6-333P-201ENST00000459117 107 ntBASIC5.41□□□□□ -1.54
LIG3P49916 RPS21P4-201ENST00000487122 248 ntBASIC5.41□□□□□ -1.54
LIG3P49916 TTC39CP1-201ENST00000512513 755 ntBASIC5.41□□□□□ -1.54
LIG3P49916 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC5.41□□□□□ -1.54
LIG3P49916 RN7SKP116-201ENST00000516902 319 ntBASIC5.41□□□□□ -1.54
LIG3P49916 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC5.41□□□□□ -1.54
LIG3P49916 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC5.41□□□□□ -1.54
LIG3P49916 SETP7-201ENST00000552169 453 ntBASIC5.41□□□□□ -1.54
LIG3P49916 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC5.41□□□□□ -1.54
LIG3P49916 AC022884.2-201ENST00000578535 580 ntBASIC5.41□□□□□ -1.54
LIG3P49916 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC5.41□□□□□ -1.54
LIG3P49916 AP000769.2-201ENST00000602344 396 ntBASIC5.41□□□□□ -1.54
LIG3P49916 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC5.41□□□□□ -1.54
LIG3P49916 AC006329.2-201ENST00000611491 394 ntBASIC5.41□□□□□ -1.54
LIG3P49916 AL365204.3-201ENST00000612448 685 ntBASIC5.41□□□□□ -1.54
LIG3P49916 uc_338.11-201ENST00000619132 160 ntBASIC5.41□□□□□ -1.54
LIG3P49916 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.41□□□□□ -1.54
LIG3P49916 AL161637.1-201ENST00000622380 412 ntBASIC5.41□□□□□ -1.54
LIG3P49916 AL136313.1-201ENST00000624804 202 ntBASIC5.41□□□□□ -1.54
LIG3P49916 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC5.41□□□□□ -1.54
LIG3P49916 U6.114-201ENST00000636407 96 ntBASIC5.41□□□□□ -1.54
LIG3P49916 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.41□□□□□ -1.54
LIG3P49916 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
LIG3P49916 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.41□□□□□ -1.54
LIG3P49916 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
LIG3P49916 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
LIG3P49916 AP001273.1-201ENST00000624493 3152 ntBASIC5.41□□□□□ -1.54
LIG3P49916 PAPPA-AS1-201ENST00000445861 2450 ntBASIC5.41□□□□□ -1.54
LIG3P49916 SOCS5P3-201ENST00000425115 1576 ntBASIC5.41□□□□□ -1.54
LIG3P49916 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC5.41□□□□□ -1.54
LIG3P49916 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.41□□□□□ -1.54
LIG3P49916 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.41□□□□□ -1.54
LIG3P49916 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
LIG3P49916 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.41□□□□□ -1.54
LIG3P49916 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
LIG3P49916 SAGE2P-201ENST00000420011 2126 ntBASIC5.41□□□□□ -1.54
LIG3P49916 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC5.41□□□□□ -1.54
LIG3P49916 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
LIG3P49916 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
LIG3P49916 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
LIG3P49916 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
LIG3P49916 RNU6-179P-201ENST00000363350 107 ntBASIC5.4□□□□□ -1.54
LIG3P49916 Y_RNA.315-201ENST00000365117 102 ntBASIC5.4□□□□□ -1.54
LIG3P49916 RNU6-831P-201ENST00000384548 107 ntBASIC5.4□□□□□ -1.54
LIG3P49916 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.4□□□□□ -1.54
LIG3P49916 OR4K12P-201ENST00000406538 961 ntBASIC5.4□□□□□ -1.54
LIG3P49916 RNU6-516P-201ENST00000411381 104 ntBASIC5.4□□□□□ -1.54
LIG3P49916 AC007738.1-201ENST00000413892 348 ntBASIC5.4□□□□□ -1.54
LIG3P49916 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC5.4□□□□□ -1.54
LIG3P49916 RPL23AP38-201ENST00000423801 469 ntBASIC5.4□□□□□ -1.54
LIG3P49916 IGKV1OR-3-201ENST00000446944 348 ntBASIC5.4□□□□□ -1.54
LIG3P49916 AL031584.1-201ENST00000447169 754 ntBASIC5.4□□□□□ -1.54
LIG3P49916 RNU6ATAC28P-201ENST00000459249 118 ntBASIC5.4□□□□□ -1.54
LIG3P49916 AC092754.1-201ENST00000472975 479 ntBASIC5.4□□□□□ -1.54
LIG3P49916 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC5.4□□□□□ -1.54
LIG3P49916 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC5.4□□□□□ -1.54
LIG3P49916 AC092436.1-201ENST00000506450 503 ntBASIC5.4□□□□□ -1.54
LIG3P49916 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.4□□□□□ -1.54
LIG3P49916 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC5.4□□□□□ -1.54
LIG3P49916 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC5.4□□□□□ -1.54
LIG3P49916 RPL7P20-201ENST00000520308 745 ntBASIC5.4□□□□□ -1.54
LIG3P49916 AC022790.1-201ENST00000522872 204 ntBASIC5.4□□□□□ -1.54
LIG3P49916 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC5.4□□□□□ -1.54
LIG3P49916 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.4□□□□□ -1.54
LIG3P49916 FAM60DP-201ENST00000524174 632 ntBASIC5.4□□□□□ -1.54
LIG3P49916 ARL6IP1P1-201ENST00000545836 610 ntBASIC5.4□□□□□ -1.54
LIG3P49916 MIR4703-201ENST00000577728 79 ntBASIC5.4□□□□□ -1.54
LIG3P49916 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.4□□□□□ -1.54
LIG3P49916 AL133215.3-201ENST00000609801 448 ntBASIC5.4□□□□□ -1.54
LIG3P49916 SDR42E1P1-201ENST00000611327 477 ntBASIC5.4□□□□□ -1.54
LIG3P49916 AC040168.1-201ENST00000623594 991 ntBASIC5.4□□□□□ -1.54
LIG3P49916 TEX41-265ENST00000627785 704 ntTSL 5 BASIC5.4□□□□□ -1.54
LIG3P49916 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC5.4□□□□□ -1.54
LIG3P49916 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
LIG3P49916 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.4□□□□□ -1.55
LIG3P49916 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
LIG3P49916 DLD-204ENST00000437604 1859 ntTSL 2 BASIC5.4□□□□□ -1.55
LIG3P49916 TAB3P1-202ENST00000452645 1634 ntBASIC5.4□□□□□ -1.55
LIG3P49916 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
LIG3P49916 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
LIG3P49916 AC244517.1-201ENST00000606030 2086 ntBASIC5.39□□□□□ -1.55
LIG3P49916 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
LIG3P49916 AC107027.3-201ENST00000565095 3473 ntBASIC5.39□□□□□ -1.55
LIG3P49916 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
LIG3P49916 SAMMSON-213ENST00000641336 1521 ntBASIC5.39□□□□□ -1.55
LIG3P49916 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.39□□□□□ -1.55
LIG3P49916 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
LIG3P49916 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC5.39□□□□□ -1.55
LIG3P49916 Y_RNA.138-201ENST00000363462 102 ntBASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms