Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RPL34P20-201ENST00000442771 351 ntBASIC4.56□□□□□ -1.68
MSX2P35548 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC4.56□□□□□ -1.68
MSX2P35548 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC4.56□□□□□ -1.68
MSX2P35548 RPL7P19-201ENST00000469948 618 ntBASIC4.56□□□□□ -1.68
MSX2P35548 AC233702.1-201ENST00000482905 502 ntBASIC4.56□□□□□ -1.68
MSX2P35548 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC4.56□□□□□ -1.68
MSX2P35548 GAPDHP56-201ENST00000506031 988 ntBASIC4.56□□□□□ -1.68
MSX2P35548 SNORD60.2-201ENST00000516883 86 ntBASIC4.56□□□□□ -1.68
MSX2P35548 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC4.56□□□□□ -1.68
MSX2P35548 HMGB1P19-201ENST00000517578 577 ntBASIC4.56□□□□□ -1.68
MSX2P35548 AC107953.1-201ENST00000522216 297 ntBASIC4.56□□□□□ -1.68
MSX2P35548 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC4.56□□□□□ -1.68
MSX2P35548 AC022790.1-201ENST00000522872 204 ntBASIC4.56□□□□□ -1.68
MSX2P35548 AP005597.4-201ENST00000526762 229 ntBASIC4.56□□□□□ -1.68
MSX2P35548 ZNF705CP-201ENST00000530515 889 ntBASIC4.56□□□□□ -1.68
MSX2P35548 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.56□□□□□ -1.68
MSX2P35548 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC4.56□□□□□ -1.68
MSX2P35548 SMARCE1P3-201ENST00000553649 1231 ntBASIC4.56□□□□□ -1.68
MSX2P35548 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.56□□□□□ -1.68
MSX2P35548 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.56□□□□□ -1.68
MSX2P35548 AL356432.3-201ENST00000568952 465 ntBASIC4.56□□□□□ -1.68
MSX2P35548 HMGB1P6-201ENST00000569046 646 ntBASIC4.56□□□□□ -1.68
MSX2P35548 SNORA74C-1-201ENST00000580726 201 ntBASIC4.56□□□□□ -1.68
MSX2P35548 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.56□□□□□ -1.68
MSX2P35548 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.56□□□□□ -1.68
MSX2P35548 AC010525.2-201ENST00000590920 195 ntBASIC4.56□□□□□ -1.68
MSX2P35548 AC021646.1-201ENST00000605469 484 ntBASIC4.56□□□□□ -1.68
MSX2P35548 AC091979.2-201ENST00000607514 214 ntBASIC4.56□□□□□ -1.68
MSX2P35548 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
MSX2P35548 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
MSX2P35548 AC140113.4-201ENST00000622087 222 ntBASIC4.56□□□□□ -1.68
MSX2P35548 AC090617.10-201ENST00000624308 134 ntBASIC4.56□□□□□ -1.68
MSX2P35548 AL691477.1-201ENST00000624398 162 ntBASIC4.56□□□□□ -1.68
MSX2P35548 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.56□□□□□ -1.68
MSX2P35548 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
MSX2P35548 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
MSX2P35548 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
MSX2P35548 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
MSX2P35548 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
MSX2P35548 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
MSX2P35548 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC4.55□□□□□ -1.68
MSX2P35548 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
MSX2P35548 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
MSX2P35548 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.55□□□□□ -1.68
MSX2P35548 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.55□□□□□ -1.68
MSX2P35548 AC092447.10-201ENST00000620607 1652 ntBASIC4.55□□□□□ -1.68
MSX2P35548 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
MSX2P35548 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
MSX2P35548 EOGT-210ENST00000615922 1931 ntBASIC4.55□□□□□ -1.68
MSX2P35548 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
MSX2P35548 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.55□□□□□ -1.68
MSX2P35548 U3.2-201ENST00000362981 210 ntBASIC4.55□□□□□ -1.68
MSX2P35548 Y_RNA.132-201ENST00000363421 102 ntBASIC4.55□□□□□ -1.68
MSX2P35548 RNU6-1097P-201ENST00000363586 107 ntBASIC4.55□□□□□ -1.68
MSX2P35548 RNU1-43P-201ENST00000365052 165 ntBASIC4.55□□□□□ -1.68
MSX2P35548 Y_RNA.474-201ENST00000384341 102 ntBASIC4.55□□□□□ -1.68
MSX2P35548 DSTNP4-201ENST00000399472 474 ntBASIC4.55□□□□□ -1.68
MSX2P35548 MRM2-202ENST00000407040 582 ntTSL 3 BASIC4.55□□□□□ -1.68
MSX2P35548 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC4.55□□□□□ -1.68
MSX2P35548 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC4.55□□□□□ -1.68
MSX2P35548 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC4.55□□□□□ -1.68
MSX2P35548 RPL36AP36-201ENST00000418616 301 ntBASIC4.55□□□□□ -1.68
MSX2P35548 UQCRBP1-201ENST00000421129 336 ntBASIC4.55□□□□□ -1.68
MSX2P35548 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
MSX2P35548 SRIP2-201ENST00000428470 166 ntBASIC4.55□□□□□ -1.68
MSX2P35548 RPL7L1P9-201ENST00000431298 745 ntBASIC4.55□□□□□ -1.68
MSX2P35548 RPL23AP30-201ENST00000432419 501 ntBASIC4.55□□□□□ -1.68
MSX2P35548 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
MSX2P35548 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.55□□□□□ -1.68
MSX2P35548 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC4.55□□□□□ -1.68
MSX2P35548 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC4.55□□□□□ -1.68
MSX2P35548 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC4.55□□□□□ -1.68
MSX2P35548 AC092647.2-201ENST00000452998 253 ntBASIC4.55□□□□□ -1.68
MSX2P35548 AL121877.1-201ENST00000453704 622 ntBASIC4.55□□□□□ -1.68
MSX2P35548 PABPC1P3-201ENST00000469174 459 ntBASIC4.55□□□□□ -1.68
MSX2P35548 RPS21P4-201ENST00000487122 248 ntBASIC4.55□□□□□ -1.68
MSX2P35548 RN7SL184P-201ENST00000488308 297 ntBASIC4.55□□□□□ -1.68
MSX2P35548 AC011005.3-201ENST00000491624 395 ntBASIC4.55□□□□□ -1.68
MSX2P35548 RN7SL558P-201ENST00000497468 299 ntBASIC4.55□□□□□ -1.68
MSX2P35548 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC4.55□□□□□ -1.68
MSX2P35548 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC4.55□□□□□ -1.68
MSX2P35548 AC110792.2-201ENST00000510278 224 ntBASIC4.55□□□□□ -1.68
MSX2P35548 AC018797.3-201ENST00000513388 1241 ntBASIC4.55□□□□□ -1.68
MSX2P35548 RNA5SP392-201ENST00000516905 112 ntBASIC4.55□□□□□ -1.68
MSX2P35548 Y_RNA.719-201ENST00000517156 106 ntBASIC4.55□□□□□ -1.68
MSX2P35548 AC134698.5-201ENST00000519444 336 ntBASIC4.55□□□□□ -1.68
MSX2P35548 IGKV2-18-201ENST00000522607 343 ntBASIC4.55□□□□□ -1.68
MSX2P35548 PSMA2P1-201ENST00000526365 646 ntBASIC4.55□□□□□ -1.68
MSX2P35548 AC087241.2-201ENST00000535801 324 ntBASIC4.55□□□□□ -1.68
MSX2P35548 AC024940.3-201ENST00000538551 316 ntBASIC4.55□□□□□ -1.68
MSX2P35548 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.55□□□□□ -1.68
MSX2P35548 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC4.55□□□□□ -1.68
MSX2P35548 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC4.55□□□□□ -1.68
MSX2P35548 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC4.55□□□□□ -1.68
MSX2P35548 LLPHP1-201ENST00000603571 367 ntBASIC4.55□□□□□ -1.68
MSX2P35548 Z84480.1-201ENST00000605131 311 ntBASIC4.55□□□□□ -1.68
MSX2P35548 AC211433.2-201ENST00000608433 387 ntBASIC4.55□□□□□ -1.68
MSX2P35548 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC4.55□□□□□ -1.68
MSX2P35548 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.55□□□□□ -1.68
MSX2P35548 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 540.7 ms