Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CR381572.1-201ENST00000625098 102 ntBASIC2.22□□□□□ -2.05
HLA-DMBP28068 MIR622-201ENST00000638396 96 ntBASIC2.22□□□□□ -2.05
HLA-DMBP28068 AP002907.1-201ENST00000606361 1430 ntBASIC2.22□□□□□ -2.05
HLA-DMBP28068 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
HLA-DMBP28068 AC000403.1-201ENST00000613696 3585 ntBASIC2.21□□□□□ -2.05
HLA-DMBP28068 ZNF90P1-201ENST00000480493 1951 ntBASIC2.21□□□□□ -2.05
HLA-DMBP28068 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC2.21□□□□□ -2.06
HLA-DMBP28068 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
HLA-DMBP28068 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.21□□□□□ -2.06
HLA-DMBP28068 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.21□□□□□ -2.06
HLA-DMBP28068 RNU1-35P-201ENST00000362782 153 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 VTRNA1-1-201ENST00000363120 99 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 SNORA71.1-201ENST00000364523 117 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 MT-TC-201ENST00000387405 66 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 RAP1BP1-201ENST00000412709 553 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC2.21□□□□□ -2.06
HLA-DMBP28068 ATG3P1-201ENST00000419507 911 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC2.21□□□□□ -2.06
HLA-DMBP28068 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.21□□□□□ -2.06
HLA-DMBP28068 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC2.21□□□□□ -2.06
HLA-DMBP28068 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC2.21□□□□□ -2.06
HLA-DMBP28068 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.21□□□□□ -2.06
HLA-DMBP28068 MTND2P21-201ENST00000436242 1042 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 RPS29P6-201ENST00000438196 145 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 IGKV1OR-3-201ENST00000446944 348 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC2.21□□□□□ -2.06
HLA-DMBP28068 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.21□□□□□ -2.06
HLA-DMBP28068 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC2.21□□□□□ -2.06
HLA-DMBP28068 snoU13.4-201ENST00000458916 104 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
HLA-DMBP28068 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
HLA-DMBP28068 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC2.21□□□□□ -2.06
HLA-DMBP28068 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC2.21□□□□□ -2.06
HLA-DMBP28068 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.21□□□□□ -2.06
HLA-DMBP28068 AC104057.1-201ENST00000515547 497 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 RNA5SP76-201ENST00000516277 87 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 PTK2-220ENST00000520151 573 ntTSL 4 BASIC2.21□□□□□ -2.06
HLA-DMBP28068 OR5G4P-201ENST00000525251 760 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 AC019227.1-201ENST00000526902 510 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.21□□□□□ -2.06
HLA-DMBP28068 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
HLA-DMBP28068 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC2.21□□□□□ -2.06
HLA-DMBP28068 AC092470.1-201ENST00000546187 132 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.21□□□□□ -2.06
HLA-DMBP28068 AL121603.1-201ENST00000553815 142 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC2.21□□□□□ -2.06
HLA-DMBP28068 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC2.21□□□□□ -2.06
HLA-DMBP28068 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC2.21□□□□□ -2.06
HLA-DMBP28068 AC091057.2-201ENST00000602594 792 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 RPL23AP88-201ENST00000605759 454 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 ATP5A1P2-202ENST00000616464 443 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 STMN1P1-201ENST00000617809 440 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC2.21□□□□□ -2.06
HLA-DMBP28068 AC022509.4-201ENST00000621404 572 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 AC006386.2-201ENST00000624491 75 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 AC012005.1-201ENST00000624575 75 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 AC097372.4-201ENST00000625025 466 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC2.21□□□□□ -2.06
HLA-DMBP28068 AL356118.1-201ENST00000635272 1078 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 MIR6733-201ENST00000635723 61 ntBASIC2.21□□□□□ -2.06
HLA-DMBP28068 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
HLA-DMBP28068 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
HLA-DMBP28068 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.2□□□□□ -2.06
HLA-DMBP28068 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC2.2□□□□□ -2.06
HLA-DMBP28068 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
HLA-DMBP28068 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC2.2□□□□□ -2.06
HLA-DMBP28068 OR5H2-201ENST00000355273 945 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 SNORA14A-201ENST00000364773 135 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 RNU6-40P-201ENST00000384254 107 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 RNU6-339P-201ENST00000384310 107 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 Y_RNA.493-201ENST00000384422 102 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 U3.26-201ENST00000391236 204 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 RNU2-17P-201ENST00000410290 190 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 AC092745.2-202ENST00000411880 369 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC2.2□□□□□ -2.06
HLA-DMBP28068 COTL1P1-201ENST00000422309 375 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 AC005189.1-201ENST00000431286 310 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.2□□□□□ -2.06
HLA-DMBP28068 FABP5P3-201ENST00000437960 408 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 AC093156.1-201ENST00000440382 670 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC2.2□□□□□ -2.06
HLA-DMBP28068 AL831737.1-201ENST00000441288 271 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC2.2□□□□□ -2.06
HLA-DMBP28068 GAPDHP39-201ENST00000481866 979 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 RPS3AP14-201ENST00000483907 780 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 AC011825.1-201ENST00000484967 388 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 AP001025.2-201ENST00000490908 477 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC2.2□□□□□ -2.06
HLA-DMBP28068 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
HLA-DMBP28068 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC2.2□□□□□ -2.06
HLA-DMBP28068 AC008565.1-201ENST00000509046 885 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2.2□□□□□ -2.06
HLA-DMBP28068 AC083923.1-201ENST00000523708 376 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 FAM60DP-201ENST00000524174 632 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.2□□□□□ -2.06
HLA-DMBP28068 AC092474.3-201ENST00000603022 568 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 BNIP3P11-201ENST00000603878 563 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 AC073387.2-201ENST00000604797 784 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 AC135178.6-201ENST00000605314 398 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 AC004775.1-201ENST00000607389 753 ntBASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms