Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
HMGB1P09429 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HMGB1P09429 RNU6-433P-201ENST00000363216 104 ntBASIC5.01□□□□□ -1.61
HMGB1P09429 RNU1-39P-201ENST00000383897 165 ntBASIC5.01□□□□□ -1.61
HMGB1P09429 MIR325-201ENST00000385260 98 ntBASIC5.01□□□□□ -1.61
HMGB1P09429 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
HMGB1P09429 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC5.01□□□□□ -1.61
HMGB1P09429 UBE2FP1-201ENST00000416536 447 ntBASIC5.01□□□□□ -1.61
HMGB1P09429 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC5.01□□□□□ -1.61
HMGB1P09429 OR8F1P-201ENST00000425243 930 ntBASIC5.01□□□□□ -1.61
HMGB1P09429 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC5.01□□□□□ -1.61
HMGB1P09429 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC5.01□□□□□ -1.61
HMGB1P09429 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC5.01□□□□□ -1.61
HMGB1P09429 SNRPGP6-201ENST00000451124 220 ntBASIC5.01□□□□□ -1.61
HMGB1P09429 AC104472.2-201ENST00000469035 601 ntBASIC5.01□□□□□ -1.61
HMGB1P09429 RN7SL330P-201ENST00000469709 307 ntBASIC5.01□□□□□ -1.61
HMGB1P09429 RPS23P1-201ENST00000491662 432 ntBASIC5.01□□□□□ -1.61
HMGB1P09429 RPL30P5-201ENST00000494923 336 ntBASIC5.01□□□□□ -1.61
HMGB1P09429 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC5.01□□□□□ -1.61
HMGB1P09429 AC017037.1-201ENST00000508460 471 ntBASIC5.01□□□□□ -1.61
HMGB1P09429 TTC39CP1-201ENST00000512513 755 ntBASIC5.01□□□□□ -1.61
HMGB1P09429 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC5.01□□□□□ -1.61
HMGB1P09429 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC5.01□□□□□ -1.61
HMGB1P09429 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC5.01□□□□□ -1.61
HMGB1P09429 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC5.01□□□□□ -1.61
HMGB1P09429 AC136618.2-201ENST00000575091 400 ntBASIC5.01□□□□□ -1.61
HMGB1P09429 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC5.01□□□□□ -1.61
HMGB1P09429 MIR4760-201ENST00000585040 80 ntBASIC5.01□□□□□ -1.61
HMGB1P09429 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC5.01□□□□□ -1.61
HMGB1P09429 AC079089.3-201ENST00000603094 673 ntBASIC5.01□□□□□ -1.61
HMGB1P09429 AL133393.1-201ENST00000603277 287 ntBASIC5.01□□□□□ -1.61
HMGB1P09429 AC090132.2-201ENST00000615881 347 ntBASIC5.01□□□□□ -1.61
HMGB1P09429 AC008785.1-201ENST00000624475 456 ntBASIC5.01□□□□□ -1.61
HMGB1P09429 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC5.01□□□□□ -1.61
HMGB1P09429 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
HMGB1P09429 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HMGB1P09429 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC5.01□□□□□ -1.61
HMGB1P09429 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HMGB1P09429 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HMGB1P09429 AC009902.3-201ENST00000606235 2172 ntBASIC5.01□□□□□ -1.61
HMGB1P09429 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC5□□□□□ -1.61
HMGB1P09429 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC5□□□□□ -1.61
HMGB1P09429 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC5□□□□□ -1.61
HMGB1P09429 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC5□□□□□ -1.61
HMGB1P09429 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC5□□□□□ -1.61
HMGB1P09429 Y_RNA.18-201ENST00000362461 102 ntBASIC5□□□□□ -1.61
HMGB1P09429 SNORD113-6-201ENST00000363345 75 ntBASIC5□□□□□ -1.61
HMGB1P09429 RNU6-1214P-201ENST00000363650 109 ntBASIC5□□□□□ -1.61
HMGB1P09429 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC5□□□□□ -1.61
HMGB1P09429 RNA5SP36-201ENST00000410197 133 ntBASIC5□□□□□ -1.61
HMGB1P09429 AL359704.1-201ENST00000411586 781 ntBASIC5□□□□□ -1.61
HMGB1P09429 RPS3AP25-201ENST00000411660 793 ntBASIC5□□□□□ -1.61
HMGB1P09429 MTND1P21-201ENST00000412991 285 ntBASIC5□□□□□ -1.61
HMGB1P09429 AC011933.1-201ENST00000413334 321 ntBASIC5□□□□□ -1.61
HMGB1P09429 HMGB1P11-201ENST00000413899 637 ntBASIC5□□□□□ -1.61
HMGB1P09429 RPL26P29-201ENST00000415623 438 ntBASIC5□□□□□ -1.61
HMGB1P09429 MFSD13B-201ENST00000420133 1290 ntBASIC5□□□□□ -1.61
HMGB1P09429 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC5□□□□□ -1.61
HMGB1P09429 CDC27P1-201ENST00000445384 715 ntBASIC5□□□□□ -1.61
HMGB1P09429 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC5□□□□□ -1.61
HMGB1P09429 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC5□□□□□ -1.61
HMGB1P09429 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC5□□□□□ -1.61
HMGB1P09429 AC116533.1-201ENST00000459748 321 ntBASIC5□□□□□ -1.61
HMGB1P09429 RPS29P19-201ENST00000479709 171 ntBASIC5□□□□□ -1.61
HMGB1P09429 AC135721.1-201ENST00000497954 479 ntBASIC5□□□□□ -1.61
HMGB1P09429 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC5□□□□□ -1.61
HMGB1P09429 AC022447.3-201ENST00000506865 495 ntBASIC5□□□□□ -1.61
HMGB1P09429 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC5□□□□□ -1.61
HMGB1P09429 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC5□□□□□ -1.61
HMGB1P09429 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
HMGB1P09429 RNA5SP49-201ENST00000516450 115 ntBASIC5□□□□□ -1.61
HMGB1P09429 AP003461.1-201ENST00000528866 78 ntBASIC5□□□□□ -1.61
HMGB1P09429 AP000867.2-201ENST00000532468 320 ntBASIC5□□□□□ -1.61
HMGB1P09429 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
HMGB1P09429 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC5□□□□□ -1.61
HMGB1P09429 AC063950.1-201ENST00000552036 308 ntBASIC5□□□□□ -1.61
HMGB1P09429 AC124947.2-202ENST00000552735 133 ntBASIC5□□□□□ -1.61
HMGB1P09429 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC5□□□□□ -1.61
HMGB1P09429 AL355836.1-201ENST00000555951 870 ntBASIC5□□□□□ -1.61
HMGB1P09429 RPL23AP84-201ENST00000571193 464 ntBASIC5□□□□□ -1.61
HMGB1P09429 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC5□□□□□ -1.61
HMGB1P09429 MIR3609-201ENST00000582661 80 ntBASIC5□□□□□ -1.61
HMGB1P09429 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC5□□□□□ -1.61
HMGB1P09429 TPMTP1-201ENST00000592307 737 ntBASIC5□□□□□ -1.61
HMGB1P09429 AC068313.1-201ENST00000604028 1008 ntBASIC5□□□□□ -1.61
HMGB1P09429 AC013553.2-201ENST00000604244 589 ntBASIC5□□□□□ -1.61
HMGB1P09429 AL139344.1-201ENST00000605228 195 ntBASIC5□□□□□ -1.61
HMGB1P09429 AC099778.2-201ENST00000610904 211 ntBASIC5□□□□□ -1.61
HMGB1P09429 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC5□□□□□ -1.61
HMGB1P09429 AC112204.3-201ENST00000623822 332 ntBASIC5□□□□□ -1.61
HMGB1P09429 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
HMGB1P09429 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC5□□□□□ -1.61
HMGB1P09429 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC5□□□□□ -1.61
HMGB1P09429 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
HMGB1P09429 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
HMGB1P09429 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC5□□□□□ -1.61
HMGB1P09429 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
HMGB1P09429 RNA5SP509-201ENST00000364577 119 ntBASIC4.99□□□□□ -1.61
HMGB1P09429 SNORA14A-201ENST00000364773 135 ntBASIC4.99□□□□□ -1.61
HMGB1P09429 SOD2P1-201ENST00000396543 562 ntBASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms