Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC3.58□□□□□ -1.84
LMX1BO60663 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC3.58□□□□□ -1.84
LMX1BO60663 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC3.58□□□□□ -1.84
LMX1BO60663 AC091133.4-201ENST00000511142 308 ntBASIC3.58□□□□□ -1.84
LMX1BO60663 RN7SKP298-201ENST00000515950 94 ntBASIC3.58□□□□□ -1.84
LMX1BO60663 ARL2BPP5-201ENST00000523141 481 ntBASIC3.58□□□□□ -1.84
LMX1BO60663 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.58□□□□□ -1.84
LMX1BO60663 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.58□□□□□ -1.84
LMX1BO60663 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
LMX1BO60663 SERPINE4P-201ENST00000554978 281 ntBASIC3.58□□□□□ -1.84
LMX1BO60663 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC3.58□□□□□ -1.84
LMX1BO60663 MIR3913-1-201ENST00000577744 102 ntBASIC3.58□□□□□ -1.84
LMX1BO60663 AC053481.3-201ENST00000577881 843 ntBASIC3.58□□□□□ -1.84
LMX1BO60663 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.58□□□□□ -1.84
LMX1BO60663 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC3.58□□□□□ -1.84
LMX1BO60663 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC3.58□□□□□ -1.84
LMX1BO60663 BNIP3P30-201ENST00000601184 574 ntBASIC3.58□□□□□ -1.84
LMX1BO60663 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC3.58□□□□□ -1.84
LMX1BO60663 BCRP9-201ENST00000605312 388 ntBASIC3.58□□□□□ -1.84
LMX1BO60663 RNU4-89P-201ENST00000607443 133 ntBASIC3.58□□□□□ -1.84
LMX1BO60663 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
LMX1BO60663 MIR6875-201ENST00000617506 72 ntBASIC3.58□□□□□ -1.84
LMX1BO60663 AC067931.1-201ENST00000624190 671 ntBASIC3.58□□□□□ -1.84
LMX1BO60663 AC231657.1-201ENST00000624313 397 ntBASIC3.58□□□□□ -1.84
LMX1BO60663 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
LMX1BO60663 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.58□□□□□ -1.84
LMX1BO60663 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
LMX1BO60663 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
LMX1BO60663 AC018529.3-201ENST00000624212 2254 ntBASIC3.58□□□□□ -1.84
LMX1BO60663 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
LMX1BO60663 SYF2-202ENST00000354361 926 ntTSL 2 BASIC3.57□□□□□ -1.84
LMX1BO60663 Y_RNA.88-201ENST00000363029 99 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 AGR3-202ENST00000402239 563 ntTSL 2 BASIC3.57□□□□□ -1.84
LMX1BO60663 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.57□□□□□ -1.84
LMX1BO60663 HMGB1P11-201ENST00000413899 637 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 AL139415.2-201ENST00000431968 163 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.57□□□□□ -1.84
LMX1BO60663 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.57□□□□□ -1.84
LMX1BO60663 AC006011.1-201ENST00000442758 349 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 AC244505.5-201ENST00000443639 207 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 RPL7P31-201ENST00000450192 724 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 EIF4A1P11-201ENST00000451239 222 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 RGS5-217ENST00000451759 835 ntTSL 3 BASIC3.57□□□□□ -1.84
LMX1BO60663 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC3.57□□□□□ -1.84
LMX1BO60663 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.57□□□□□ -1.84
LMX1BO60663 KLF3P2-201ENST00000465138 268 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 MTCO3P38-201ENST00000468910 766 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.57□□□□□ -1.84
LMX1BO60663 TMED11P-201ENST00000479478 690 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 LARP1BP2-201ENST00000486594 519 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 AC105252.1-201ENST00000503089 286 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 AC116353.2-201ENST00000505332 712 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC3.57□□□□□ -1.84
LMX1BO60663 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
LMX1BO60663 RNU6-506P-201ENST00000516553 94 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC3.57□□□□□ -1.84
LMX1BO60663 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.57□□□□□ -1.84
LMX1BO60663 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.57□□□□□ -1.84
LMX1BO60663 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC3.57□□□□□ -1.84
LMX1BO60663 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.57□□□□□ -1.84
LMX1BO60663 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.57□□□□□ -1.84
LMX1BO60663 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.57□□□□□ -1.84
LMX1BO60663 SULT1C2P1-202ENST00000562418 459 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 AC092325.1-201ENST00000566449 554 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 AC018555.1-201ENST00000567548 1980 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 AC053481.4-201ENST00000583164 216 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
LMX1BO60663 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.57□□□□□ -1.84
LMX1BO60663 VN1R84P-201ENST00000593697 235 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 AC097468.3-201ENST00000607956 456 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.57□□□□□ -1.84
LMX1BO60663 AC103710.4-201ENST00000609301 899 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 AC243773.3-201ENST00000613270 256 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 AC091834.1-201ENST00000614543 472 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 AL158196.1-201ENST00000616786 434 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 AC092162.3-201ENST00000624511 1624 ntBASIC3.57□□□□□ -1.84
LMX1BO60663 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
LMX1BO60663 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
LMX1BO60663 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
LMX1BO60663 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
LMX1BO60663 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
LMX1BO60663 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
LMX1BO60663 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.56□□□□□ -1.84
LMX1BO60663 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.56□□□□□ -1.84
LMX1BO60663 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
LMX1BO60663 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
LMX1BO60663 AC095050.2-201ENST00000510748 1458 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
LMX1BO60663 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.56□□□□□ -1.84
LMX1BO60663 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.56□□□□□ -1.84
LMX1BO60663 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.56□□□□□ -1.84
LMX1BO60663 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
LMX1BO60663 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
LMX1BO60663 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.56□□□□□ -1.84
LMX1BO60663 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.56□□□□□ -1.84
LMX1BO60663 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC3.56□□□□□ -1.84
LMX1BO60663 Y_RNA.390-201ENST00000383932 102 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 RNU6-1042P-201ENST00000384204 107 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 MIR200C-201ENST00000384980 68 ntBASIC3.56□□□□□ -1.84
LMX1BO60663 SNORA40.3-201ENST00000390964 122 ntBASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms