Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.33□□□□□ -1.88
MSH4O15457 AL139132.1-201ENST00000431587 344 ntBASIC3.33□□□□□ -1.88
MSH4O15457 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
MSH4O15457 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC3.33□□□□□ -1.88
MSH4O15457 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.33□□□□□ -1.88
MSH4O15457 RN7SL330P-201ENST00000469709 307 ntBASIC3.33□□□□□ -1.88
MSH4O15457 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC3.33□□□□□ -1.88
MSH4O15457 AC092451.1-201ENST00000480211 153 ntBASIC3.33□□□□□ -1.88
MSH4O15457 AC104629.1-201ENST00000494226 508 ntBASIC3.33□□□□□ -1.88
MSH4O15457 AC093278.1-201ENST00000494700 600 ntBASIC3.33□□□□□ -1.88
MSH4O15457 AC114967.1-201ENST00000504890 259 ntBASIC3.33□□□□□ -1.88
MSH4O15457 GMPSP1-201ENST00000514075 579 ntBASIC3.33□□□□□ -1.88
MSH4O15457 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.33□□□□□ -1.88
MSH4O15457 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
MSH4O15457 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.33□□□□□ -1.88
MSH4O15457 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC3.33□□□□□ -1.88
MSH4O15457 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC3.33□□□□□ -1.88
MSH4O15457 AC015871.2-201ENST00000603605 948 ntBASIC3.33□□□□□ -1.88
MSH4O15457 AC025588.3-201ENST00000604182 274 ntBASIC3.33□□□□□ -1.88
MSH4O15457 AC099785.1-201ENST00000605697 437 ntBASIC3.33□□□□□ -1.88
MSH4O15457 AP000238.1-201ENST00000608759 426 ntBASIC3.33□□□□□ -1.88
MSH4O15457 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.33□□□□□ -1.88
MSH4O15457 VN1R7P-201ENST00000619242 903 ntBASIC3.33□□□□□ -1.88
MSH4O15457 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.33□□□□□ -1.88
MSH4O15457 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC3.33□□□□□ -1.88
MSH4O15457 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.33□□□□□ -1.88
MSH4O15457 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
MSH4O15457 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.33□□□□□ -1.88
MSH4O15457 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.33□□□□□ -1.88
MSH4O15457 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.33□□□□□ -1.88
MSH4O15457 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.32□□□□□ -1.88
MSH4O15457 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.32□□□□□ -1.88
MSH4O15457 AC118273.1-201ENST00000525324 3006 ntBASIC3.32□□□□□ -1.88
MSH4O15457 MIR148B-201ENST00000362252 99 ntBASIC3.32□□□□□ -1.88
MSH4O15457 RNA5SP189-201ENST00000364920 115 ntBASIC3.32□□□□□ -1.88
MSH4O15457 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.32□□□□□ -1.88
MSH4O15457 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC3.32□□□□□ -1.88
MSH4O15457 Y_RNA.493-201ENST00000384422 102 ntBASIC3.32□□□□□ -1.88
MSH4O15457 EI24P2-201ENST00000397776 1076 ntBASIC3.32□□□□□ -1.88
MSH4O15457 RPL5P18-201ENST00000406671 891 ntBASIC3.32□□□□□ -1.88
MSH4O15457 UQCRFS1P3-201ENST00000407697 385 ntBASIC3.32□□□□□ -1.88
MSH4O15457 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.32□□□□□ -1.88
MSH4O15457 EEF1A1P41-201ENST00000414667 207 ntBASIC3.32□□□□□ -1.88
MSH4O15457 EI24P1-201ENST00000416584 867 ntBASIC3.32□□□□□ -1.88
MSH4O15457 OFD1P18Y-201ENST00000420889 959 ntBASIC3.32□□□□□ -1.88
MSH4O15457 AL049610.1-201ENST00000423374 372 ntBASIC3.32□□□□□ -1.88
MSH4O15457 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.32□□□□□ -1.88
MSH4O15457 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC3.32□□□□□ -1.88
MSH4O15457 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
MSH4O15457 AC112492.1-201ENST00000449607 712 ntBASIC3.32□□□□□ -1.88
MSH4O15457 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.32□□□□□ -1.88
MSH4O15457 RPL23AP62-201ENST00000463396 453 ntBASIC3.32□□□□□ -1.88
MSH4O15457 SYPL1P1-201ENST00000473622 768 ntBASIC3.32□□□□□ -1.88
MSH4O15457 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC3.32□□□□□ -1.88
MSH4O15457 TMED11P-201ENST00000479478 690 ntBASIC3.32□□□□□ -1.88
MSH4O15457 RPS4XP13-201ENST00000483219 789 ntBASIC3.32□□□□□ -1.88
MSH4O15457 RN7SL633P-201ENST00000488974 297 ntBASIC3.32□□□□□ -1.88
MSH4O15457 TRAV31-201ENST00000502780 342 ntBASIC3.32□□□□□ -1.88
MSH4O15457 AC026414.1-201ENST00000504046 698 ntBASIC3.32□□□□□ -1.88
MSH4O15457 KCTD9P5-201ENST00000504141 1170 ntBASIC3.32□□□□□ -1.88
MSH4O15457 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.32□□□□□ -1.88
MSH4O15457 RNU6-885P-201ENST00000516607 104 ntBASIC3.32□□□□□ -1.88
MSH4O15457 RNA5SP135-201ENST00000517019 125 ntBASIC3.32□□□□□ -1.88
MSH4O15457 AC068657.1-201ENST00000520807 306 ntBASIC3.32□□□□□ -1.88
MSH4O15457 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.32□□□□□ -1.88
MSH4O15457 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC3.32□□□□□ -1.88
MSH4O15457 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
MSH4O15457 AC104072.1-201ENST00000568817 668 ntBASIC3.32□□□□□ -1.88
MSH4O15457 AC090666.1-201ENST00000578241 445 ntBASIC3.32□□□□□ -1.88
MSH4O15457 SNORD39.3-201ENST00000584451 71 ntBASIC3.32□□□□□ -1.88
MSH4O15457 AC008507.2-201ENST00000588402 1176 ntBASIC3.32□□□□□ -1.88
MSH4O15457 AC090330.1-201ENST00000588646 764 ntBASIC3.32□□□□□ -1.88
MSH4O15457 SNRPGP15-201ENST00000600149 222 ntBASIC3.32□□□□□ -1.88
MSH4O15457 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.32□□□□□ -1.88
MSH4O15457 IGHV3-29-201ENST00000604817 344 ntBASIC3.32□□□□□ -1.88
MSH4O15457 AC012531.5-201ENST00000611375 151 ntBASIC3.32□□□□□ -1.88
MSH4O15457 AL450489.1-201ENST00000612071 468 ntBASIC3.32□□□□□ -1.88
MSH4O15457 CYCSP41-201ENST00000616920 296 ntBASIC3.32□□□□□ -1.88
MSH4O15457 AP000720.1-201ENST00000625091 483 ntBASIC3.32□□□□□ -1.88
MSH4O15457 AC111188.2-201ENST00000529697 1387 ntBASIC3.32□□□□□ -1.88
MSH4O15457 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.32□□□□□ -1.88
MSH4O15457 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.32□□□□□ -1.88
MSH4O15457 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.31□□□□□ -1.88
MSH4O15457 RNU6-582P-201ENST00000362989 107 ntBASIC3.31□□□□□ -1.88
MSH4O15457 RNU6-263P-201ENST00000363811 107 ntBASIC3.31□□□□□ -1.88
MSH4O15457 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
MSH4O15457 SNORD116-23-201ENST00000384645 92 ntBASIC3.31□□□□□ -1.88
MSH4O15457 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
MSH4O15457 AL121972.1-201ENST00000402023 252 ntBASIC3.31□□□□□ -1.88
MSH4O15457 RPL7P27-201ENST00000403775 720 ntBASIC3.31□□□□□ -1.88
MSH4O15457 U3.42-201ENST00000408746 214 ntBASIC3.31□□□□□ -1.88
MSH4O15457 RNU2-37P-201ENST00000410695 177 ntBASIC3.31□□□□□ -1.88
MSH4O15457 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.31□□□□□ -1.88
MSH4O15457 DUTP6-201ENST00000425573 462 ntBASIC3.31□□□□□ -1.88
MSH4O15457 AC022018.1-201ENST00000430685 241 ntBASIC3.31□□□□□ -1.88
MSH4O15457 USP9YP31-201ENST00000431405 881 ntBASIC3.31□□□□□ -1.88
MSH4O15457 ARF4P4-201ENST00000439608 520 ntBASIC3.31□□□□□ -1.88
MSH4O15457 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.31□□□□□ -1.88
MSH4O15457 AL162389.1-201ENST00000449233 177 ntBASIC3.31□□□□□ -1.88
MSH4O15457 UQCRHP3-201ENST00000451503 251 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms