Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.45■□□□□ 0.54
COL5A1P20908 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL5A1P20908 AL691432.2-201ENST00000607222 2038 ntBASIC18.45■□□□□ 0.54
COL5A1P20908 AC093525.10-201ENST00000625130 1569 ntBASIC18.45■□□□□ 0.54
COL5A1P20908 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL5A1P20908 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
COL5A1P20908 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL5A1P20908 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.45■□□□□ 0.54
COL5A1P20908 KRT8P10-201ENST00000450021 1447 ntBASIC18.45■□□□□ 0.54
COL5A1P20908 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL5A1P20908 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A1P20908 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A1P20908 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A1P20908 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A1P20908 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A1P20908 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.44■□□□□ 0.54
COL5A1P20908 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A1P20908 PRELID1P1-202ENST00000567272 903 ntBASIC18.44■□□□□ 0.54
COL5A1P20908 MIR3652-201ENST00000579335 131 ntBASIC18.44■□□□□ 0.54
COL5A1P20908 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.44■□□□□ 0.54
COL5A1P20908 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
COL5A1P20908 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A1P20908 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.44■□□□□ 0.54
COL5A1P20908 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.44■□□□□ 0.54
COL5A1P20908 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A1P20908 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A1P20908 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
COL5A1P20908 AC246785.2-201ENST00000432512 513 ntBASIC18.44■□□□□ 0.54
COL5A1P20908 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.44■□□□□ 0.54
COL5A1P20908 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.44■□□□□ 0.54
COL5A1P20908 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.44■□□□□ 0.54
COL5A1P20908 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.44■□□□□ 0.54
COL5A1P20908 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A1P20908 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL5A1P20908 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
COL5A1P20908 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL5A1P20908 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
COL5A1P20908 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL5A1P20908 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
COL5A1P20908 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL5A1P20908 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL5A1P20908 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL5A1P20908 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.43■□□□□ 0.54
COL5A1P20908 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.43■□□□□ 0.54
COL5A1P20908 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.43■□□□□ 0.54
COL5A1P20908 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC18.43■□□□□ 0.54
COL5A1P20908 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.43■□□□□ 0.54
COL5A1P20908 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.43■□□□□ 0.54
COL5A1P20908 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.43■□□□□ 0.54
COL5A1P20908 RN7SL510P-201ENST00000581311 263 ntBASIC18.43■□□□□ 0.54
COL5A1P20908 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.43■□□□□ 0.54
COL5A1P20908 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL5A1P20908 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
COL5A1P20908 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL5A1P20908 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
COL5A1P20908 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.43■□□□□ 0.54
COL5A1P20908 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL5A1P20908 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL5A1P20908 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A1P20908 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A1P20908 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A1P20908 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.42■□□□□ 0.54
COL5A1P20908 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
COL5A1P20908 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A1P20908 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.42■□□□□ 0.54
COL5A1P20908 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A1P20908 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.42■□□□□ 0.54
COL5A1P20908 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A1P20908 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.42■□□□□ 0.54
COL5A1P20908 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.42■□□□□ 0.54
COL5A1P20908 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.42■□□□□ 0.54
COL5A1P20908 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A1P20908 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A1P20908 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.42■□□□□ 0.54
COL5A1P20908 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL5A1P20908 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.42■□□□□ 0.54
COL5A1P20908 IFNL4P1-201ENST00000607083 540 ntBASIC18.42■□□□□ 0.54
COL5A1P20908 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.42■□□□□ 0.54
COL5A1P20908 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.41■□□□□ 0.54
COL5A1P20908 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A1P20908 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A1P20908 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A1P20908 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.41■□□□□ 0.54
COL5A1P20908 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A1P20908 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A1P20908 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.41■□□□□ 0.54
COL5A1P20908 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
COL5A1P20908 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A1P20908 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A1P20908 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A1P20908 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A1P20908 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.41■□□□□ 0.54
COL5A1P20908 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A1P20908 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.41■□□□□ 0.54
COL5A1P20908 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.41■□□□□ 0.54
COL5A1P20908 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
COL5A1P20908 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A1P20908 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A1P20908 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A1P20908 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms