Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 MTCO1P35-201ENST00000515270 228 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AC025884.1-201ENST00000556034 378 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 MIR4697-201ENST00000582977 78 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AL353997.4-201ENST00000586196 166 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AC112220.3-201ENST00000605502 502 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AL591034.3-201ENST00000605511 685 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AC112484.5-201ENST00000624189 228 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AC005832.2-201ENST00000538921 1430 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 CUL1P1-201ENST00000509510 2425 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 FAM133CP-201ENST00000332869 704 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 DEFB108F-201ENST00000344638 222 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 SNORA4.1-201ENST00000364263 144 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 U1.1-201ENST00000384101 164 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 RNU6-1207P-201ENST00000384343 107 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 RNU6-83P-201ENST00000384568 112 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 HMGN2P8-201ENST00000391458 268 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 U3.42-201ENST00000408746 214 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 TPT1P2-201ENST00000413105 503 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 HMGB3P23-201ENST00000414981 585 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AC083875.1-201ENST00000419509 405 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 RPL17P36-201ENST00000420302 549 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 MTATP6P4-201ENST00000427725 675 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 RPS11P1-201ENST00000451072 473 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AC020898.1-201ENST00000474167 787 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 RPL7P24-201ENST00000493052 752 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AL139099.1-201ENST00000497398 403 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AC104090.1-201ENST00000506341 1171 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AL359273.1-201ENST00000510918 627 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 RNA5SP216-201ENST00000516111 123 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 SNORA70.16-201ENST00000516390 95 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 NARSP2-201ENST00000518524 679 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AC239860.2-201ENST00000525886 270 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 DEFB108D-201ENST00000527787 222 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AGGF1P5-201ENST00000567900 919 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 RN7SL600P-201ENST00000581811 299 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AP001429.1-201ENST00000602568 530 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AL596327.1-201ENST00000603629 213 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AL133507.1-201ENST00000605269 557 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AL158211.4-201ENST00000606988 584 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AL139089.1-201ENST00000620372 975 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AC006111.3-201ENST00000622137 383 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 ZNF876P-202ENST00000398732 1485 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AC092326.2-201ENST00000624772 1561 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 AC011477.1-204ENST00000623416 1325 ntBASIC3.19□□□□□ -1.9
FOXA2Q9Y261 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
FOXA2Q9Y261 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms