Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC28AQ8IWP9 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4□□□□□ -1.77
CCDC28AQ8IWP9 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4□□□□□ -1.77
CCDC28AQ8IWP9 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4□□□□□ -1.77
CCDC28AQ8IWP9 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4□□□□□ -1.77
CCDC28AQ8IWP9 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 OR5J1P-201ENST00000313544 939 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AC067945.1-201ENST00000342609 618 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 RNA5SP319-201ENST00000362768 119 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 RNU5E-8P-201ENST00000363502 116 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 RNU6-1103P-201ENST00000384150 107 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 SNORA16A-201ENST00000384342 137 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 RNA5SP239-201ENST00000410218 129 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 TOMM22P1-201ENST00000418578 312 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 Z74021.1-201ENST00000423610 407 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AL662874.1-201ENST00000426065 230 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AC073464.1-201ENST00000429823 534 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 FCF1P1-201ENST00000432690 571 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 RPL21P112-201ENST00000434403 463 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AL161722.2-201ENST00000434731 981 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AL451074.3-201ENST00000437709 472 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 PRPF38AP2-201ENST00000438179 851 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AL162389.1-201ENST00000449233 177 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 RPL31P15-201ENST00000449770 338 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 PSPHP1-201ENST00000450062 261 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 YWHAEP1-201ENST00000453697 763 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AP000873.1-201ENST00000463987 400 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 NIPA2P2-201ENST00000496376 1083 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AC022616.3-201ENST00000523940 148 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AC125611.2-201ENST00000551907 647 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AP000860.1-201ENST00000605250 559 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AL031666.3-201ENST00000609320 1006 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AC074101.1-201ENST00000637861 241 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 TAB3P1-202ENST00000452645 1634 ntBASIC3.99□□□□□ -1.77
CCDC28AQ8IWP9 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 MIR423-201ENST00000362201 94 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 RNU6-181P-201ENST00000363225 107 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 U3.11-201ENST00000364476 212 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 RNU1-43P-201ENST00000365052 165 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 RNU1-89P-201ENST00000384592 164 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 MIR181A1-201ENST00000385026 110 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 RNU4-55P-201ENST00000410731 137 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 RPL7AP73-201ENST00000413490 353 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 UBE2FP1-201ENST00000416536 447 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 SRSF1P1-201ENST00000424058 520 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC090774.1-201ENST00000435925 246 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC004938.1-201ENST00000438468 308 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 MTATP6P13-201ENST00000438531 667 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC005094.1-201ENST00000440420 368 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AL391987.1-201ENST00000441025 200 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 RPL36AP39-201ENST00000445859 318 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 GAPDHP25-201ENST00000447061 1001 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AL359073.1-201ENST00000448036 403 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC132479.1-201ENST00000449160 144 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms