Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC3.81□□□□□ -1.8
USP43Q70EL4 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC3.81□□□□□ -1.8
USP43Q70EL4 HMGB3P21-201ENST00000452483 547 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 SNRPGP5-201ENST00000456003 220 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 AL136097.1-201ENST00000456945 913 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 RNU6ATAC28P-201ENST00000459249 118 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 AC109327.1-201ENST00000471666 403 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 AP000852.1-201ENST00000472460 573 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 AC069439.1-201ENST00000494739 167 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 AC104164.2-201ENST00000496953 495 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.81□□□□□ -1.8
USP43Q70EL4 ARL2BPP4-201ENST00000506854 471 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 MTCO3P9-201ENST00000506989 781 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC3.81□□□□□ -1.8
USP43Q70EL4 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC3.81□□□□□ -1.8
USP43Q70EL4 AC093824.1-201ENST00000508796 343 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 AC005798.1-201ENST00000513715 387 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 AC108471.1-201ENST00000513977 287 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC3.81□□□□□ -1.8
USP43Q70EL4 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.81□□□□□ -1.8
USP43Q70EL4 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.81□□□□□ -1.8
USP43Q70EL4 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.81□□□□□ -1.8
USP43Q70EL4 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
USP43Q70EL4 AL109766.1-201ENST00000555080 552 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 NIFKP8-201ENST00000560500 874 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 MIR4458-201ENST00000578872 75 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 OR4K7P-201ENST00000580232 945 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 AC005730.3-201ENST00000583067 366 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.81□□□□□ -1.8
USP43Q70EL4 AC093227.2-201ENST00000589357 285 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 AC008782.1-201ENST00000603386 430 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 AL365503.1-201ENST00000605247 905 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 AL390208.1-201ENST00000605885 644 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 AL354760.1-201ENST00000608357 643 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.81□□□□□ -1.8
USP43Q70EL4 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC3.81□□□□□ -1.8
USP43Q70EL4 MIR7844-201ENST00000616161 122 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
USP43Q70EL4 U6.107-201ENST00000637108 79 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 AC099063.3-201ENST00000642066 185 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 OR5H6-203ENST00000642105 978 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 NCAPGP1-201ENST00000505112 1814 ntBASIC3.81□□□□□ -1.8
USP43Q70EL4 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
USP43Q70EL4 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.81□□□□□ -1.8
USP43Q70EL4 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
USP43Q70EL4 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC3.8□□□□□ -1.8
USP43Q70EL4 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.8□□□□□ -1.8
USP43Q70EL4 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
USP43Q70EL4 AC109315.1-201ENST00000584143 1347 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
USP43Q70EL4 OR11H4-201ENST00000315409 1082 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
USP43Q70EL4 RNU4-91P-201ENST00000364778 135 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 RNA5SP479-201ENST00000364858 117 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 SNORD6-201ENST00000365444 73 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 RNU6-348P-201ENST00000384386 107 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 RNU6-452P-201ENST00000384406 107 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 RNU6-185P-201ENST00000384421 107 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 PIGPP2-201ENST00000411569 458 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC3.8□□□□□ -1.8
USP43Q70EL4 RPEP3-201ENST00000425462 676 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 ARPC3P1-201ENST00000437218 533 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.8□□□□□ -1.8
USP43Q70EL4 NFU1P2-201ENST00000448700 469 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC3.8□□□□□ -1.8
USP43Q70EL4 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC3.8□□□□□ -1.8
USP43Q70EL4 SNRPGP9-201ENST00000456025 225 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 AC011276.1-201ENST00000469688 323 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
USP43Q70EL4 RN7SL812P-201ENST00000493791 279 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 RPL31P61-201ENST00000496160 376 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
USP43Q70EL4 MTCYBP18-201ENST00000501056 747 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 AC104108.1-201ENST00000509930 412 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC3.8□□□□□ -1.8
USP43Q70EL4 ARL2BPP6-201ENST00000512757 439 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.8□□□□□ -1.8
USP43Q70EL4 AC087808.1-201ENST00000520501 361 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC3.8□□□□□ -1.8
USP43Q70EL4 OSBPL9P2-201ENST00000526582 1228 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 AP000827.1-201ENST00000527814 258 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.8□□□□□ -1.8
USP43Q70EL4 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC3.8□□□□□ -1.8
USP43Q70EL4 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.8□□□□□ -1.8
USP43Q70EL4 AC008083.2-201ENST00000546707 476 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 AC025260.1-201ENST00000548858 430 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC3.8□□□□□ -1.8
USP43Q70EL4 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.8□□□□□ -1.8
USP43Q70EL4 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC3.8□□□□□ -1.8
USP43Q70EL4 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC3.8□□□□□ -1.8
USP43Q70EL4 AC023575.1-201ENST00000580510 358 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.8□□□□□ -1.8
USP43Q70EL4 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.8□□□□□ -1.8
USP43Q70EL4 BNIP3P9-201ENST00000603714 553 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 AL133338.2-201ENST00000604292 736 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 AC115286.1-201ENST00000604298 434 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 AC112220.3-201ENST00000605502 502 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 AC023043.4-201ENST00000612081 449 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 AC092628.2-201ENST00000622492 339 ntBASIC3.8□□□□□ -1.8
USP43Q70EL4 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms