Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 U2.12-201ENST00000613778 191 ntBASIC3.02□□□□□ -1.93
USP54Q70EL1 U2.20-201ENST00000613956 192 ntBASIC3.02□□□□□ -1.93
USP54Q70EL1 U2.9-201ENST00000615427 191 ntBASIC3.02□□□□□ -1.93
USP54Q70EL1 U2.11-201ENST00000616345 191 ntBASIC3.02□□□□□ -1.93
USP54Q70EL1 U2.2-201ENST00000616535 191 ntBASIC3.02□□□□□ -1.93
USP54Q70EL1 U2.3-201ENST00000617785 191 ntBASIC3.02□□□□□ -1.93
USP54Q70EL1 U2.19-201ENST00000618602 191 ntBASIC3.02□□□□□ -1.93
USP54Q70EL1 RNU2-1-201ENST00000618664 191 ntBASIC3.02□□□□□ -1.93
USP54Q70EL1 U2.6-201ENST00000619225 191 ntBASIC3.02□□□□□ -1.93
USP54Q70EL1 U2.5-201ENST00000619465 191 ntBASIC3.02□□□□□ -1.93
USP54Q70EL1 U2.10-201ENST00000620268 191 ntBASIC3.02□□□□□ -1.93
USP54Q70EL1 AC093591.3-201ENST00000634516 308 ntBASIC3.02□□□□□ -1.93
USP54Q70EL1 DYNLT3P1-201ENST00000378574 347 ntBASIC3.01□□□□□ -1.93
USP54Q70EL1 SNORA64-201ENST00000384674 134 ntBASIC3.01□□□□□ -1.93
USP54Q70EL1 AL354719.1-201ENST00000406535 843 ntBASIC3.01□□□□□ -1.93
USP54Q70EL1 RNA5SP239-201ENST00000410218 129 ntBASIC3.01□□□□□ -1.93
USP54Q70EL1 RN7SKP123-201ENST00000410732 291 ntBASIC3.01□□□□□ -1.93
USP54Q70EL1 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.01□□□□□ -1.93
USP54Q70EL1 RPL31P45-201ENST00000419532 356 ntBASIC3.01□□□□□ -1.93
USP54Q70EL1 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC3.01□□□□□ -1.93
USP54Q70EL1 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC3.01□□□□□ -1.93
USP54Q70EL1 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.01□□□□□ -1.93
USP54Q70EL1 TRBV1-201ENST00000476502 284 ntBASIC3.01□□□□□ -1.93
USP54Q70EL1 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC3.01□□□□□ -1.93
USP54Q70EL1 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC3.01□□□□□ -1.93
USP54Q70EL1 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.01□□□□□ -1.93
USP54Q70EL1 AC078814.3-201ENST00000553036 491 ntBASIC3.01□□□□□ -1.93
USP54Q70EL1 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.01□□□□□ -1.93
USP54Q70EL1 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC3.01□□□□□ -1.93
USP54Q70EL1 MTND2P13-201ENST00000577438 1039 ntBASIC3.01□□□□□ -1.93
USP54Q70EL1 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.01□□□□□ -1.93
USP54Q70EL1 AC017076.1-201ENST00000607613 578 ntBASIC3.01□□□□□ -1.93
USP54Q70EL1 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC3.01□□□□□ -1.93
USP54Q70EL1 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
USP54Q70EL1 AC022336.2-201ENST00000568966 2538 ntBASIC3.01□□□□□ -1.93
USP54Q70EL1 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
USP54Q70EL1 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.01□□□□□ -1.93
USP54Q70EL1 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
USP54Q70EL1 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.01□□□□□ -1.93
USP54Q70EL1 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
USP54Q70EL1 RN7SL499P-201ENST00000481141 276 ntBASIC3.01□□□□□ -1.93
USP54Q70EL1 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.01□□□□□ -1.93
USP54Q70EL1 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
USP54Q70EL1 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.01□□□□□ -1.93
USP54Q70EL1 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC3.01□□□□□ -1.93
USP54Q70EL1 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC3.01□□□□□ -1.93
USP54Q70EL1 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
USP54Q70EL1 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC3.01□□□□□ -1.93
USP54Q70EL1 AC067838.1-201ENST00000606064 577 ntBASIC3.01□□□□□ -1.93
USP54Q70EL1 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC3.01□□□□□ -1.93
USP54Q70EL1 AC103710.2-201ENST00000609912 942 ntBASIC3.01□□□□□ -1.93
USP54Q70EL1 AC116447.1-201ENST00000613153 453 ntBASIC3.01□□□□□ -1.93
USP54Q70EL1 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
USP54Q70EL1 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
USP54Q70EL1 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3□□□□□ -1.93
USP54Q70EL1 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
USP54Q70EL1 ADAM3A-203ENST00000461344 2157 ntBASIC3□□□□□ -1.93
USP54Q70EL1 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
USP54Q70EL1 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
USP54Q70EL1 RNU6-146P-201ENST00000384602 108 ntBASIC3□□□□□ -1.93
USP54Q70EL1 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3□□□□□ -1.93
USP54Q70EL1 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC3□□□□□ -1.93
USP54Q70EL1 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC3□□□□□ -1.93
USP54Q70EL1 RPL7P53-201ENST00000421245 739 ntBASIC3□□□□□ -1.93
USP54Q70EL1 RPS15AP28-201ENST00000435088 386 ntBASIC3□□□□□ -1.93
USP54Q70EL1 AC090819.1-201ENST00000523800 1111 ntBASIC3□□□□□ -1.93
USP54Q70EL1 OR5BN1P-201ENST00000532955 829 ntBASIC3□□□□□ -1.93
USP54Q70EL1 AC012182.1-201ENST00000570133 895 ntBASIC3□□□□□ -1.93
USP54Q70EL1 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3□□□□□ -1.93
USP54Q70EL1 AP000942.3-201ENST00000603702 160 ntBASIC3□□□□□ -1.93
USP54Q70EL1 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC3□□□□□ -1.93
USP54Q70EL1 AL356266.1-201ENST00000623311 483 ntBASIC3□□□□□ -1.93
USP54Q70EL1 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
USP54Q70EL1 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
USP54Q70EL1 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC2.99□□□□□ -1.93
USP54Q70EL1 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC2.99□□□□□ -1.93
USP54Q70EL1 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC2.99□□□□□ -1.93
USP54Q70EL1 RNA5SP385-201ENST00000515947 110 ntBASIC2.99□□□□□ -1.93
USP54Q70EL1 RNU6-943P-201ENST00000516960 98 ntBASIC2.99□□□□□ -1.93
USP54Q70EL1 AP001004.1-201ENST00000582468 324 ntBASIC2.99□□□□□ -1.93
USP54Q70EL1 MIR4506-201ENST00000584693 77 ntBASIC2.99□□□□□ -1.93
USP54Q70EL1 AP001521.1-201ENST00000609150 300 ntBASIC2.99□□□□□ -1.93
USP54Q70EL1 VN1R7P-201ENST00000619242 903 ntBASIC2.99□□□□□ -1.93
USP54Q70EL1 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
USP54Q70EL1 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
USP54Q70EL1 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.99□□□□□ -1.93
USP54Q70EL1 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
USP54Q70EL1 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
USP54Q70EL1 MIR21-201ENST00000362134 72 ntBASIC2.98□□□□□ -1.93
USP54Q70EL1 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
USP54Q70EL1 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC2.98□□□□□ -1.93
USP54Q70EL1 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
USP54Q70EL1 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
USP54Q70EL1 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
USP54Q70EL1 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC2.98□□□□□ -1.93
USP54Q70EL1 U8.13-201ENST00000390842 128 ntBASIC2.98□□□□□ -1.93
USP54Q70EL1 AL589994.1-201ENST00000404962 340 ntBASIC2.98□□□□□ -1.93
USP54Q70EL1 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
USP54Q70EL1 AC010881.1-201ENST00000433830 235 ntBASIC2.98□□□□□ -1.93
USP54Q70EL1 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms