Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 RNU6-1181P-201ENST00000384191 106 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 MIR659-201ENST00000384963 97 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 RNU6-328P-201ENST00000390887 106 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AC007066.1-201ENST00000392902 381 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AL031679.1-201ENST00000400616 525 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 MTND4LP20-201ENST00000402379 270 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 RNU2-71P-201ENST00000411395 189 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 RPS15AP38-201ENST00000413110 372 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 DNAJA1P2-201ENST00000421360 1197 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AL513174.1-201ENST00000423182 629 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 EIF1P3-201ENST00000423841 334 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 PSMA6P3-201ENST00000428242 164 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 VDAC1P3-201ENST00000434069 851 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 MTCYBP39-201ENST00000437562 491 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AL451050.1-201ENST00000450126 415 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 RAD23BP3-201ENST00000454157 1152 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 BX322784.1-201ENST00000455793 1077 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 BTF3P5-201ENST00000457252 467 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 RN7SL98P-201ENST00000462271 300 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 RPS27AP17-201ENST00000463344 455 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 MTND3P7-201ENST00000474435 343 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AC006517.1-201ENST00000480485 328 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AC114981.1-201ENST00000503897 678 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AC111000.2-201ENST00000507775 550 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AC006499.2-201ENST00000513470 337 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 RN7SKP116-201ENST00000516902 319 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 IGLVVI-25-1-201ENST00000521893 249 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AC022861.1-201ENST00000522981 663 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 NAP1L1P1-201ENST00000524793 1063 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AC006064.5-201ENST00000541782 248 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AKIRIN1P1-201ENST00000547384 544 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 BBIP1P1-201ENST00000602999 279 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AL596327.1-201ENST00000603629 213 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 OR2AS2P-201ENST00000606902 342 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AC233309.1-201ENST00000619522 751 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AL356266.1-201ENST00000623311 483 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AC040168.1-201ENST00000623594 991 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 MIR3974-201ENST00000637126 96 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 RNU6-553P-201ENST00000364047 96 ntBASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 MIR1302-8-201ENST00000408342 128 ntBASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 AL161631.1-201ENST00000417933 486 ntBASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 MFSD13B-201ENST00000420133 1290 ntBASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 FNDC3CP-201ENST00000420795 1155 ntBASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 AL035407.1-201ENST00000429211 571 ntBASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 TXNL1P1-201ENST00000429528 554 ntBASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 RPS29P7-201ENST00000439662 171 ntBASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 MTCO3P11-201ENST00000455103 774 ntBASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 AC087312.1-201ENST00000471411 480 ntBASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 VN1R105P-201ENST00000486595 910 ntBASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 RPS26P15-201ENST00000488067 348 ntBASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 RPL23AP55-201ENST00000498163 452 ntBASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 AC139783.2-201ENST00000504847 1145 ntBASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 AC108475.1-201ENST00000507880 950 ntBASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 AC108064.1-201ENST00000513791 460 ntBASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 RN7SKP244-201ENST00000516513 307 ntBASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 AC037471.2-201ENST00000564941 598 ntBASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC3.47□□□□□ -1.85
PDLIM3Q53GG5 AC002400.1-201ENST00000569310 726 ntBASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 7.7 ms