Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RNU6-156P-201ENST00000621869 107 ntBASIC4.26□□□□□ -1.73
HOXC9P31274 AC110801.1-201ENST00000623590 212 ntBASIC4.26□□□□□ -1.73
HOXC9P31274 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXC9P31274 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXC9P31274 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC4.26□□□□□ -1.73
HOXC9P31274 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HOXC9P31274 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
HOXC9P31274 AC107081.3-201ENST00000612715 2034 ntBASIC4.26□□□□□ -1.73
HOXC9P31274 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXC9P31274 Z73965.1-201ENST00000623412 2297 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.25□□□□□ -1.73
HOXC9P31274 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HOXC9P31274 FAM133CP-201ENST00000332869 704 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 RNU6-1214P-201ENST00000363650 109 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 RNU6-560P-201ENST00000364007 108 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXC9P31274 DSTNP4-201ENST00000399472 474 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 AL121834.1-202ENST00000404494 277 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 RNA5SP80-201ENST00000410475 111 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 FCF1P2-201ENST00000415284 583 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 VPS26BP1-201ENST00000417155 755 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXC9P31274 RPL36P19-201ENST00000430744 301 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXC9P31274 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC4.25□□□□□ -1.73
HOXC9P31274 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXC9P31274 RPL12P26-201ENST00000452430 487 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXC9P31274 PNPLA4P1-201ENST00000458328 305 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 MTCO2P6-201ENST00000463134 685 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC4.25□□□□□ -1.73
HOXC9P31274 RPL21P71-201ENST00000465598 459 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 AC021205.2-201ENST00000480069 347 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 AC116353.3-201ENST00000511215 249 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 SNORA3.4-201ENST00000515969 96 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXC9P31274 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXC9P31274 AP001189.2-201ENST00000527320 189 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 UBTFL10-201ENST00000528532 562 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 AP002404.1-201ENST00000532005 451 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXC9P31274 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXC9P31274 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXC9P31274 AC097478.2-201ENST00000610572 514 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 AC091304.6-201ENST00000619761 202 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 AC000123.2-201ENST00000623124 461 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
HOXC9P31274 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
HOXC9P31274 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXC9P31274 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXC9P31274 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXC9P31274 XPOTP1-201ENST00000443317 2398 ntBASIC4.25□□□□□ -1.73
HOXC9P31274 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXC9P31274 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXC9P31274 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
HOXC9P31274 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXC9P31274 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
HOXC9P31274 RNU5D-1-201ENST00000363299 116 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 RNU6-115P-201ENST00000364310 107 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 NFIB-202ENST00000380924 840 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXC9P31274 Y_RNA.500-201ENST00000384466 111 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 LAP3P1-201ENST00000403648 294 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 MTCO3P31-201ENST00000405526 789 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 ZNF603P-201ENST00000405613 487 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXC9P31274 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC4.24□□□□□ -1.73
HOXC9P31274 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXC9P31274 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXC9P31274 AC009237.2-201ENST00000421358 284 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 AL513174.1-201ENST00000423182 629 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 AC233981.1-201ENST00000423224 461 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 USP9YP31-201ENST00000431405 881 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 ATP5F1P1-201ENST00000433775 569 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXC9P31274 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXC9P31274 RFC5P1-201ENST00000454419 874 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXC9P31274 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXC9P31274 MTCYBP16-201ENST00000509187 1129 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXC9P31274 RNU6-1225P-201ENST00000516336 65 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 RNU5A-4P-201ENST00000516588 111 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 ZNF321P-202ENST00000550843 495 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 AL132657.2-201ENST00000564417 358 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 AC093519.1-201ENST00000566109 298 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 AC008751.2-201ENST00000597885 980 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC4.24□□□□□ -1.73
HOXC9P31274 BNIP3P26-201ENST00000600827 554 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 DUXAP3-201ENST00000603616 594 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 AL139344.1-201ENST00000605228 195 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 HSPE1P14-201ENST00000605812 302 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 AL451074.6-201ENST00000608512 729 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 AC023158.2-201ENST00000614876 543 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 AC005858.4-201ENST00000623191 700 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 AC019226.2-201ENST00000625973 424 ntBASIC4.24□□□□□ -1.73
HOXC9P31274 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC4.24□□□□□ -1.73
HOXC9P31274 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXC9P31274 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXC9P31274 OR5BR1P-201ENST00000524992 1330 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms