Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC2.34□□□□□ -2.03
COL6A3P12111 AC010378.1-201ENST00000619270 362 ntBASIC2.34□□□□□ -2.03
COL6A3P12111 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC2.34□□□□□ -2.03
COL6A3P12111 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC2.34□□□□□ -2.03
COL6A3P12111 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC2.34□□□□□ -2.03
COL6A3P12111 GTF2IP23-201ENST00000423746 351 ntBASIC2.34□□□□□ -2.04
COL6A3P12111 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC2.34□□□□□ -2.04
COL6A3P12111 RPL38P4-201ENST00000502376 214 ntBASIC2.34□□□□□ -2.04
COL6A3P12111 AC117532.1-201ENST00000514638 323 ntBASIC2.34□□□□□ -2.04
COL6A3P12111 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC2.34□□□□□ -2.04
COL6A3P12111 OR10D4P-201ENST00000525892 951 ntBASIC2.34□□□□□ -2.04
COL6A3P12111 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC2.34□□□□□ -2.04
COL6A3P12111 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.34□□□□□ -2.04
COL6A3P12111 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.33□□□□□ -2.04
COL6A3P12111 FO393414.1-201ENST00000428697 1184 ntBASIC2.33□□□□□ -2.04
COL6A3P12111 AL592437.1-201ENST00000443781 492 ntBASIC2.33□□□□□ -2.04
COL6A3P12111 RPS4XP11-201ENST00000446897 772 ntBASIC2.33□□□□□ -2.04
COL6A3P12111 CREM-226ENST00000469949 721 ntTSL 3 BASIC2.33□□□□□ -2.04
COL6A3P12111 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.33□□□□□ -2.04
COL6A3P12111 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC2.33□□□□□ -2.04
COL6A3P12111 AC005730.3-201ENST00000583067 366 ntBASIC2.33□□□□□ -2.04
COL6A3P12111 AC022960.2-201ENST00000616300 666 ntBASIC2.33□□□□□ -2.04
COL6A3P12111 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
COL6A3P12111 AL133412.1-201ENST00000380194 2992 ntBASIC2.33□□□□□ -2.04
COL6A3P12111 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.33□□□□□ -2.04
COL6A3P12111 SNORA11.4-201ENST00000408823 129 ntBASIC2.33□□□□□ -2.04
COL6A3P12111 AC006960.1-201ENST00000419980 153 ntBASIC2.33□□□□□ -2.04
COL6A3P12111 VN1R17P-201ENST00000472048 1090 ntBASIC2.33□□□□□ -2.04
COL6A3P12111 RPS29P11-201ENST00000496507 171 ntBASIC2.33□□□□□ -2.04
COL6A3P12111 AC119751.1-201ENST00000513357 765 ntBASIC2.33□□□□□ -2.04
COL6A3P12111 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC2.33□□□□□ -2.04
COL6A3P12111 AC004825.2-201ENST00000616634 455 ntBASIC2.33□□□□□ -2.04
COL6A3P12111 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.33□□□□□ -2.04
COL6A3P12111 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
COL6A3P12111 AC107021.2-201ENST00000567714 2095 ntBASIC2.33□□□□□ -2.04
COL6A3P12111 RNU7-95P-201ENST00000459222 64 ntBASIC2.33□□□□□ -2.04
COL6A3P12111 MIR3683-201ENST00000580847 82 ntBASIC2.33□□□□□ -2.04
COL6A3P12111 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.33□□□□□ -2.04
COL6A3P12111 MIR3605-201ENST00000583214 100 ntBASIC2.33□□□□□ -2.04
COL6A3P12111 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.32□□□□□ -2.04
COL6A3P12111 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
COL6A3P12111 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
COL6A3P12111 MTND5P23-201ENST00000430812 1655 ntBASIC2.32□□□□□ -2.04
COL6A3P12111 Y_RNA.458-201ENST00000384240 102 ntBASIC2.32□□□□□ -2.04
COL6A3P12111 HSP90AA5P-201ENST00000438353 2192 ntBASIC2.32□□□□□ -2.04
COL6A3P12111 AC092473.1-201ENST00000441098 221 ntBASIC2.32□□□□□ -2.04
COL6A3P12111 RPS7P5-201ENST00000441482 581 ntBASIC2.32□□□□□ -2.04
COL6A3P12111 MTCO3P20-201ENST00000454926 688 ntBASIC2.32□□□□□ -2.04
COL6A3P12111 OR52A4P-203ENST00000498233 1014 ntBASIC2.32□□□□□ -2.04
COL6A3P12111 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
COL6A3P12111 AL356266.1-201ENST00000623311 483 ntBASIC2.32□□□□□ -2.04
COL6A3P12111 MTCO1P7-201ENST00000419523 1542 ntBASIC2.32□□□□□ -2.04
COL6A3P12111 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
COL6A3P12111 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
COL6A3P12111 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC2.32□□□□□ -2.04
COL6A3P12111 MTND5P35-201ENST00000557537 1720 ntBASIC2.32□□□□□ -2.04
COL6A3P12111 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC2.32□□□□□ -2.04
COL6A3P12111 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.32□□□□□ -2.04
COL6A3P12111 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC2.32□□□□□ -2.04
COL6A3P12111 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC2.32□□□□□ -2.04
COL6A3P12111 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC2.32□□□□□ -2.04
COL6A3P12111 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC2.32□□□□□ -2.04
COL6A3P12111 DNAJC19P9-201ENST00000555084 351 ntBASIC2.32□□□□□ -2.04
COL6A3P12111 AC005046.1-201ENST00000608515 625 ntBASIC2.32□□□□□ -2.04
COL6A3P12111 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC2.31□□□□□ -2.04
COL6A3P12111 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC2.31□□□□□ -2.04
COL6A3P12111 AC080125.1-201ENST00000414888 684 ntBASIC2.31□□□□□ -2.04
COL6A3P12111 HAR1A.1-201ENST00000459583 118 ntBASIC2.31□□□□□ -2.04
COL6A3P12111 AC021146.5-201ENST00000503544 545 ntBASIC2.31□□□□□ -2.04
COL6A3P12111 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
COL6A3P12111 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.31□□□□□ -2.04
COL6A3P12111 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC2.31□□□□□ -2.04
COL6A3P12111 RNA5SP102-201ENST00000516865 106 ntBASIC2.31□□□□□ -2.04
COL6A3P12111 CKS1BP7-201ENST00000522230 235 ntBASIC2.31□□□□□ -2.04
COL6A3P12111 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.31□□□□□ -2.04
COL6A3P12111 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC2.31□□□□□ -2.04
COL6A3P12111 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
COL6A3P12111 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC2.31□□□□□ -2.04
COL6A3P12111 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.31□□□□□ -2.04
COL6A3P12111 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC2.31□□□□□ -2.04
COL6A3P12111 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.31□□□□□ -2.04
COL6A3P12111 RNU6-805P-201ENST00000365643 106 ntBASIC2.31□□□□□ -2.04
COL6A3P12111 SKINT1L-201ENST00000401057 817 ntBASIC2.31□□□□□ -2.04
COL6A3P12111 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC2.31□□□□□ -2.04
COL6A3P12111 PPP1R2P5-201ENST00000457256 603 ntBASIC2.31□□□□□ -2.04
COL6A3P12111 SNORA64.4-201ENST00000516632 81 ntBASIC2.31□□□□□ -2.04
COL6A3P12111 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
COL6A3P12111 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
COL6A3P12111 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.3□□□□□ -2.04
COL6A3P12111 RPS7P2-201ENST00000435134 607 ntBASIC2.3□□□□□ -2.04
COL6A3P12111 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC2.3□□□□□ -2.04
COL6A3P12111 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.3□□□□□ -2.04
COL6A3P12111 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC2.3□□□□□ -2.04
COL6A3P12111 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
COL6A3P12111 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC2.3□□□□□ -2.04
COL6A3P12111 API5P2-201ENST00000397055 1498 ntBASIC2.3□□□□□ -2.04
COL6A3P12111 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC2.3□□□□□ -2.04
COL6A3P12111 MTND5P3-201ENST00000438536 1800 ntBASIC2.3□□□□□ -2.04
COL6A3P12111 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.3□□□□□ -2.04
COL6A3P12111 RN7SKP247-201ENST00000411094 308 ntBASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms