Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 CR381572.1-201ENST00000625098 102 ntBASIC3.39□□□□□ -1.87
SDC3O75056 AL732372.2-225ENST00000642124 456 ntBASIC3.39□□□□□ -1.87
SDC3O75056 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SDC3O75056 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.39□□□□□ -1.87
SDC3O75056 AC004925.1-201ENST00000624256 2706 ntBASIC3.39□□□□□ -1.87
SDC3O75056 AL353746.1-201ENST00000566293 6881 ntBASIC3.39□□□□□ -1.87
SDC3O75056 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.38□□□□□ -1.87
SDC3O75056 AP001148.1-201ENST00000624124 2359 ntBASIC3.38□□□□□ -1.87
SDC3O75056 SNORD82-201ENST00000365530 70 ntBASIC3.38□□□□□ -1.87
SDC3O75056 RNU6-925P-201ENST00000384629 104 ntBASIC3.38□□□□□ -1.87
SDC3O75056 MIR184-201ENST00000384962 84 ntBASIC3.38□□□□□ -1.87
SDC3O75056 RNU6-821P-201ENST00000390995 107 ntBASIC3.38□□□□□ -1.87
SDC3O75056 RNU6-1300P-201ENST00000391046 108 ntBASIC3.38□□□□□ -1.87
SDC3O75056 RSL24D1P1-201ENST00000404972 493 ntBASIC3.38□□□□□ -1.87
SDC3O75056 RNA5SP129-201ENST00000410276 118 ntBASIC3.38□□□□□ -1.87
SDC3O75056 AL136133.1-201ENST00000413694 376 ntBASIC3.38□□□□□ -1.87
SDC3O75056 Z75741.2-201ENST00000417272 1167 ntBASIC3.38□□□□□ -1.87
SDC3O75056 AIMP1P1-201ENST00000418670 937 ntBASIC3.38□□□□□ -1.87
SDC3O75056 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.38□□□□□ -1.87
SDC3O75056 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.38□□□□□ -1.87
SDC3O75056 DPRXP1-201ENST00000426312 460 ntBASIC3.38□□□□□ -1.87
SDC3O75056 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.38□□□□□ -1.87
SDC3O75056 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.38□□□□□ -1.87
SDC3O75056 MTCO1P53-201ENST00000441633 699 ntBASIC3.38□□□□□ -1.87
SDC3O75056 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.38□□□□□ -1.87
SDC3O75056 AC079776.3-201ENST00000450665 370 ntBASIC3.38□□□□□ -1.87
SDC3O75056 RPS24P6-201ENST00000452670 400 ntBASIC3.38□□□□□ -1.87
SDC3O75056 HMGN2P16-201ENST00000456802 261 ntBASIC3.38□□□□□ -1.87
SDC3O75056 RN7SL504P-201ENST00000494496 287 ntBASIC3.38□□□□□ -1.87
SDC3O75056 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.38□□□□□ -1.87
SDC3O75056 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.38□□□□□ -1.87
SDC3O75056 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.38□□□□□ -1.87
SDC3O75056 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC3.38□□□□□ -1.87
SDC3O75056 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.38□□□□□ -1.87
SDC3O75056 ZKSCAN7P1-201ENST00000543668 673 ntBASIC3.38□□□□□ -1.87
SDC3O75056 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.38□□□□□ -1.87
SDC3O75056 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.38□□□□□ -1.87
SDC3O75056 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC3.38□□□□□ -1.87
SDC3O75056 MIR4276-201ENST00000584832 70 ntBASIC3.38□□□□□ -1.87
SDC3O75056 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC3.38□□□□□ -1.87
SDC3O75056 KLKP1-201ENST00000595979 403 ntBASIC3.38□□□□□ -1.87
SDC3O75056 AC091057.3-201ENST00000602684 733 ntBASIC3.38□□□□□ -1.87
SDC3O75056 AC006254.3-201ENST00000603353 884 ntBASIC3.38□□□□□ -1.87
SDC3O75056 AL162713.1-201ENST00000604480 262 ntBASIC3.38□□□□□ -1.87
SDC3O75056 AC128687.1-201ENST00000605304 619 ntBASIC3.38□□□□□ -1.87
SDC3O75056 YPEL5P2-201ENST00000605553 359 ntBASIC3.38□□□□□ -1.87
SDC3O75056 AC144521.1-201ENST00000607148 956 ntBASIC3.38□□□□□ -1.87
SDC3O75056 AC024933.1-201ENST00000608472 348 ntBASIC3.38□□□□□ -1.87
SDC3O75056 AC006329.2-201ENST00000611491 394 ntBASIC3.38□□□□□ -1.87
SDC3O75056 AC104763.3-201ENST00000613765 618 ntBASIC3.38□□□□□ -1.87
SDC3O75056 AC010975.3-201ENST00000618727 978 ntBASIC3.38□□□□□ -1.87
SDC3O75056 AL391262.2-201ENST00000622466 494 ntBASIC3.38□□□□□ -1.87
SDC3O75056 AC099654.9-201ENST00000637055 678 ntBASIC3.38□□□□□ -1.87
SDC3O75056 AL021368.2-201ENST00000606125 5352 ntBASIC3.38□□□□□ -1.87
SDC3O75056 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
SDC3O75056 AC073073.2-201ENST00000609827 2578 ntBASIC3.38□□□□□ -1.87
SDC3O75056 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
SDC3O75056 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.37□□□□□ -1.87
SDC3O75056 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SDC3O75056 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
SDC3O75056 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.37□□□□□ -1.87
SDC3O75056 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SDC3O75056 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SDC3O75056 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SDC3O75056 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SDC3O75056 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SDC3O75056 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
SDC3O75056 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
SDC3O75056 RNU6-730P-201ENST00000383954 104 ntBASIC3.37□□□□□ -1.87
SDC3O75056 SNORD65.1-201ENST00000390889 71 ntBASIC3.37□□□□□ -1.87
SDC3O75056 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.37□□□□□ -1.87
SDC3O75056 RAC1P8-201ENST00000427086 527 ntBASIC3.37□□□□□ -1.87
SDC3O75056 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.37□□□□□ -1.87
SDC3O75056 AL590103.1-201ENST00000434488 307 ntBASIC3.37□□□□□ -1.87
SDC3O75056 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.37□□□□□ -1.87
SDC3O75056 HMGB3P6-201ENST00000444896 598 ntBASIC3.37□□□□□ -1.87
SDC3O75056 RPL7P52-201ENST00000449200 742 ntBASIC3.37□□□□□ -1.87
SDC3O75056 SNORA59A-201ENST00000459326 152 ntBASIC3.37□□□□□ -1.87
SDC3O75056 AC023598.1-201ENST00000472521 361 ntBASIC3.37□□□□□ -1.87
SDC3O75056 MTCO3P35-201ENST00000485582 781 ntBASIC3.37□□□□□ -1.87
SDC3O75056 AL024509.2-201ENST00000493462 493 ntBASIC3.37□□□□□ -1.87
SDC3O75056 AC108078.3-201ENST00000502633 489 ntBASIC3.37□□□□□ -1.87
SDC3O75056 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SDC3O75056 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.37□□□□□ -1.87
SDC3O75056 FCF1P8-201ENST00000510322 597 ntBASIC3.37□□□□□ -1.87
SDC3O75056 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC3.37□□□□□ -1.87
SDC3O75056 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.37□□□□□ -1.87
SDC3O75056 AC027309.2-201ENST00000520566 192 ntBASIC3.37□□□□□ -1.87
SDC3O75056 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.37□□□□□ -1.87
SDC3O75056 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.37□□□□□ -1.87
SDC3O75056 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.37□□□□□ -1.87
SDC3O75056 MIR3912-201ENST00000577566 105 ntBASIC3.37□□□□□ -1.87
SDC3O75056 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.37□□□□□ -1.87
SDC3O75056 BNIP3P39-201ENST00000601077 554 ntBASIC3.37□□□□□ -1.87
SDC3O75056 XIAPP1-201ENST00000603162 600 ntBASIC3.37□□□□□ -1.87
SDC3O75056 AL121652.1-201ENST00000608851 448 ntBASIC3.37□□□□□ -1.87
SDC3O75056 RMST_8.1-201ENST00000610287 165 ntBASIC3.37□□□□□ -1.87
SDC3O75056 AL138478.1-201ENST00000612252 832 ntBASIC3.37□□□□□ -1.87
SDC3O75056 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.37□□□□□ -1.87
SDC3O75056 CYCSP41-201ENST00000616920 296 ntBASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 131.2 ms