Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC4.15□□□□□ -1.75
HOXC11O43248 AL831737.1-201ENST00000441288 271 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXC11O43248 ANP32BP2-201ENST00000454525 545 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 CEACAMP4-201ENST00000457676 421 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 RNU7-125P-201ENST00000458760 62 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 AC093278.1-201ENST00000494700 600 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 RPL23AP55-201ENST00000498163 452 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 MLLT10P2-201ENST00000506434 249 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 AC034159.1-201ENST00000513885 583 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 AC093677.1-201ENST00000514414 678 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 RNU7-143P-201ENST00000516781 65 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 RNU1-45P-201ENST00000517191 141 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXC11O43248 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC4.15□□□□□ -1.75
HOXC11O43248 AC068587.4-201ENST00000533893 186 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXC11O43248 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXC11O43248 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.15□□□□□ -1.75
HOXC11O43248 AC087481.2-201ENST00000565492 330 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.15□□□□□ -1.75
HOXC11O43248 ANKRD36BP2-206ENST00000575193 1245 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 MIR5685-201ENST00000579080 79 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXC11O43248 MIR3158-1-201ENST00000583596 81 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 AC090616.2-202ENST00000584248 222 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXC11O43248 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXC11O43248 TUG1_1.1-201ENST00000610654 145 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 AC048347.1-201ENST00000624621 427 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXC11O43248 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXC11O43248 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXC11O43248 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXC11O43248 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXC11O43248 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
HOXC11O43248 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
HOXC11O43248 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
HOXC11O43248 RNU6-777P-201ENST00000364265 104 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 RNU6-744P-201ENST00000365557 107 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 CGA-201ENST00000369582 729 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXC11O43248 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXC11O43248 RNU6-1316P-201ENST00000384242 108 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 HMGB1P11-201ENST00000413899 637 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXC11O43248 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXC11O43248 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXC11O43248 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXC11O43248 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXC11O43248 VDAC1P3-201ENST00000434069 851 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 AL590103.1-201ENST00000434488 307 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.14□□□□□ -1.75
HOXC11O43248 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXC11O43248 LSM1P1-201ENST00000438629 273 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXC11O43248 OR6C5P-201ENST00000452388 923 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 FABP3P2-201ENST00000453169 399 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 HMGB1P22-201ENST00000505315 124 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 AC010486.2-201ENST00000505572 483 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 POU5F1P7-201ENST00000508759 541 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 MTND1P22-201ENST00000510572 951 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 LTV1P1-201ENST00000510683 1237 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 RNU6-714P-201ENST00000516963 103 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXC11O43248 AC091516.1-201ENST00000549191 703 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 AC107016.1-201ENST00000550463 337 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXC11O43248 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.14□□□□□ -1.75
HOXC11O43248 RPL23AP87-202ENST00000573039 466 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC4.14□□□□□ -1.75
HOXC11O43248 MIR4644-201ENST00000579929 84 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXC11O43248 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXC11O43248 BNIP3P23-201ENST00000599655 511 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 AC011451.2-201ENST00000604303 598 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 AC006023.2-201ENST00000609916 167 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 AC064801.1-201ENST00000612025 407 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 AL590099.1-201ENST00000615276 138 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 AC006133.1-201ENST00000617106 264 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 AL603755.1-201ENST00000619504 163 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 AL354798.1-201ENST00000622505 329 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXC11O43248 AC019226.2-201ENST00000625973 424 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXC11O43248 OR8B1P-202ENST00000641132 1178 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 AC018555.1-201ENST00000567548 1980 ntBASIC4.14□□□□□ -1.75
HOXC11O43248 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXC11O43248 AC092447.10-201ENST00000620607 1652 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HOXC11O43248 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.13□□□□□ -1.75
HOXC11O43248 Y_RNA.169-201ENST00000363745 96 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXC11O43248 RNU6-1207P-201ENST00000384343 107 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 RNY3P9-201ENST00000384727 106 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 RNU6ATAC-201ENST00000408749 126 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 RN7SKP266-201ENST00000410232 287 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 RNU4-72P-201ENST00000410754 173 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 MTCO1P17-201ENST00000411522 491 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 RPL23AP39-201ENST00000415533 405 ntBASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms