Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
CBX4O00257 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CBX4O00257 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CBX4O00257 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
CBX4O00257 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CBX4O00257 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CBX4O00257 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
CBX4O00257 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CBX4O00257 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CBX4O00257 RNU6-989P-201ENST00000362756 107 ntBASIC4.85□□□□□ -1.63
CBX4O00257 Y_RNA.159-201ENST00000363674 87 ntBASIC4.85□□□□□ -1.63
CBX4O00257 RNU6-1322P-201ENST00000364309 107 ntBASIC4.85□□□□□ -1.63
CBX4O00257 RNU6-278P-201ENST00000390945 109 ntBASIC4.85□□□□□ -1.63
CBX4O00257 RNA5SP56-201ENST00000410277 118 ntBASIC4.85□□□□□ -1.63
CBX4O00257 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC4.85□□□□□ -1.63
CBX4O00257 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC4.85□□□□□ -1.63
CBX4O00257 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC4.85□□□□□ -1.63
CBX4O00257 E2F6P2-201ENST00000420708 748 ntBASIC4.85□□□□□ -1.63
CBX4O00257 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CBX4O00257 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC4.85□□□□□ -1.63
CBX4O00257 TRIM60P10Y-201ENST00000425589 751 ntBASIC4.85□□□□□ -1.63
CBX4O00257 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.85□□□□□ -1.63
CBX4O00257 GPR143P-201ENST00000434155 205 ntBASIC4.85□□□□□ -1.63
CBX4O00257 TRIM60P8Y-201ENST00000436338 762 ntBASIC4.85□□□□□ -1.63
CBX4O00257 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.85□□□□□ -1.63
CBX4O00257 AL590399.6-201ENST00000446396 307 ntBASIC4.85□□□□□ -1.63
CBX4O00257 DPPA3P1-201ENST00000448050 469 ntBASIC4.85□□□□□ -1.63
CBX4O00257 BTF3P6-201ENST00000448054 499 ntBASIC4.85□□□□□ -1.63
CBX4O00257 UBDP1-202ENST00000457888 382 ntBASIC4.85□□□□□ -1.63
CBX4O00257 AC022364.2-201ENST00000457963 554 ntBASIC4.85□□□□□ -1.63
CBX4O00257 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.85□□□□□ -1.63
CBX4O00257 AC103987.1-201ENST00000473394 348 ntBASIC4.85□□□□□ -1.63
CBX4O00257 AC090686.1-201ENST00000481577 749 ntBASIC4.85□□□□□ -1.63
CBX4O00257 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.85□□□□□ -1.63
CBX4O00257 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.85□□□□□ -1.63
CBX4O00257 RNU6-1281P-201ENST00000516223 105 ntBASIC4.85□□□□□ -1.63
CBX4O00257 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.85□□□□□ -1.63
CBX4O00257 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.85□□□□□ -1.63
CBX4O00257 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC4.85□□□□□ -1.63
CBX4O00257 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.85□□□□□ -1.63
CBX4O00257 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.85□□□□□ -1.63
CBX4O00257 AP001330.5-201ENST00000607176 411 ntBASIC4.85□□□□□ -1.63
CBX4O00257 AC007038.2-201ENST00000608095 740 ntBASIC4.85□□□□□ -1.63
CBX4O00257 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
CBX4O00257 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CBX4O00257 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CBX4O00257 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
CBX4O00257 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CBX4O00257 AL049555.1-201ENST00000562834 1933 ntBASIC4.85□□□□□ -1.63
CBX4O00257 AP001642.1-201ENST00000624727 2117 ntBASIC4.85□□□□□ -1.63
CBX4O00257 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.85□□□□□ -1.63
CBX4O00257 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.85□□□□□ -1.63
CBX4O00257 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.85□□□□□ -1.63
CBX4O00257 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.85□□□□□ -1.63
CBX4O00257 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
CBX4O00257 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
CBX4O00257 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CBX4O00257 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.84□□□□□ -1.63
CBX4O00257 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.84□□□□□ -1.63
CBX4O00257 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.84□□□□□ -1.63
CBX4O00257 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.84□□□□□ -1.63
CBX4O00257 MTCO1P24-201ENST00000515438 1558 ntBASIC4.84□□□□□ -1.63
CBX4O00257 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CBX4O00257 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CBX4O00257 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
CBX4O00257 RNU6-1097P-201ENST00000363586 107 ntBASIC4.84□□□□□ -1.63
CBX4O00257 RNU6-534P-201ENST00000364877 106 ntBASIC4.84□□□□□ -1.63
CBX4O00257 Y_RNA.303-201ENST00000364998 94 ntBASIC4.84□□□□□ -1.63
CBX4O00257 RNU6-169P-201ENST00000365336 107 ntBASIC4.84□□□□□ -1.63
CBX4O00257 RNU6-108P-201ENST00000365558 107 ntBASIC4.84□□□□□ -1.63
CBX4O00257 Y_RNA.548-201ENST00000384656 105 ntBASIC4.84□□□□□ -1.63
CBX4O00257 MIR19A-201ENST00000384878 82 ntBASIC4.84□□□□□ -1.63
CBX4O00257 MIR153-1-201ENST00000384914 90 ntBASIC4.84□□□□□ -1.63
CBX4O00257 RN7SKP106-201ENST00000410832 272 ntBASIC4.84□□□□□ -1.63
CBX4O00257 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.84□□□□□ -1.63
CBX4O00257 AL591848.1-201ENST00000413092 322 ntBASIC4.84□□□□□ -1.63
CBX4O00257 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.84□□□□□ -1.63
CBX4O00257 AL109913.1-201ENST00000421173 514 ntBASIC4.84□□□□□ -1.63
CBX4O00257 AL391219.1-201ENST00000422570 483 ntBASIC4.84□□□□□ -1.63
CBX4O00257 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC4.84□□□□□ -1.63
CBX4O00257 RPL7P54-201ENST00000438336 674 ntBASIC4.84□□□□□ -1.63
CBX4O00257 RPL23AP33-201ENST00000442301 452 ntBASIC4.84□□□□□ -1.63
CBX4O00257 MRPL48P1-201ENST00000445390 636 ntBASIC4.84□□□□□ -1.63
CBX4O00257 AC079168.2-201ENST00000453977 416 ntBASIC4.84□□□□□ -1.63
CBX4O00257 RPS23P7-201ENST00000466210 444 ntBASIC4.84□□□□□ -1.63
CBX4O00257 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.84□□□□□ -1.63
CBX4O00257 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.84□□□□□ -1.63
CBX4O00257 FTH1P21-201ENST00000512179 511 ntBASIC4.84□□□□□ -1.63
CBX4O00257 AC008549.1-201ENST00000512900 643 ntBASIC4.84□□□□□ -1.63
CBX4O00257 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC4.84□□□□□ -1.63
CBX4O00257 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC4.84□□□□□ -1.63
CBX4O00257 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC4.84□□□□□ -1.63
CBX4O00257 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.84□□□□□ -1.63
CBX4O00257 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.84□□□□□ -1.63
CBX4O00257 AP003072.2-201ENST00000527756 676 ntBASIC4.84□□□□□ -1.63
CBX4O00257 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.84□□□□□ -1.63
CBX4O00257 AL359212.1-201ENST00000556608 614 ntBASIC4.84□□□□□ -1.63
CBX4O00257 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC4.84□□□□□ -1.63
CBX4O00257 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CBX4O00257 AC012417.1-201ENST00000582307 1039 ntBASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms