Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
COL6A5A8TX70 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC1.83□□□□□ -2.12
COL6A5A8TX70 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC1.83□□□□□ -2.12
COL6A5A8TX70 AC080013.2-201ENST00000460866 323 ntBASIC1.83□□□□□ -2.12
COL6A5A8TX70 AC092991.1-201ENST00000477176 376 ntBASIC1.83□□□□□ -2.12
COL6A5A8TX70 AC072039.1-201ENST00000477611 581 ntBASIC1.83□□□□□ -2.12
COL6A5A8TX70 AC108078.3-201ENST00000502633 489 ntBASIC1.83□□□□□ -2.12
COL6A5A8TX70 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC1.83□□□□□ -2.12
COL6A5A8TX70 SNORA64.4-201ENST00000516632 81 ntBASIC1.83□□□□□ -2.12
COL6A5A8TX70 AC104027.1-201ENST00000521887 300 ntBASIC1.83□□□□□ -2.12
COL6A5A8TX70 AC100870.1-201ENST00000522035 505 ntBASIC1.83□□□□□ -2.12
COL6A5A8TX70 CKS1BP7-201ENST00000522230 235 ntBASIC1.83□□□□□ -2.12
COL6A5A8TX70 AP005660.1-201ENST00000522972 293 ntBASIC1.83□□□□□ -2.12
COL6A5A8TX70 C1GALT1P1-201ENST00000548895 1089 ntBASIC1.83□□□□□ -2.12
COL6A5A8TX70 AC105137.2-201ENST00000569073 466 ntBASIC1.83□□□□□ -2.12
COL6A5A8TX70 AC061975.8-201ENST00000587058 721 ntBASIC1.83□□□□□ -2.12
COL6A5A8TX70 AC015911.5-201ENST00000587076 451 ntBASIC1.83□□□□□ -2.12
COL6A5A8TX70 CR589904.2-201ENST00000612533 440 ntBASIC1.83□□□□□ -2.12
COL6A5A8TX70 MIR7973-1-201ENST00000614683 76 ntBASIC1.83□□□□□ -2.12
COL6A5A8TX70 MIR219B-201ENST00000637023 88 ntBASIC1.83□□□□□ -2.12
COL6A5A8TX70 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
COL6A5A8TX70 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC1.82□□□□□ -2.12
COL6A5A8TX70 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
COL6A5A8TX70 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC1.82□□□□□ -2.12
COL6A5A8TX70 Y_RNA.303-201ENST00000364998 94 ntBASIC1.82□□□□□ -2.12
COL6A5A8TX70 RPS3AP9-201ENST00000417027 792 ntBASIC1.82□□□□□ -2.12
COL6A5A8TX70 TRIM60P13-201ENST00000432350 1283 ntBASIC1.82□□□□□ -2.12
COL6A5A8TX70 KCTD9P5-201ENST00000504141 1170 ntBASIC1.82□□□□□ -2.12
COL6A5A8TX70 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC1.82□□□□□ -2.12
COL6A5A8TX70 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC1.82□□□□□ -2.12
COL6A5A8TX70 RN7SKP43-201ENST00000516173 320 ntBASIC1.82□□□□□ -2.12
COL6A5A8TX70 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC1.82□□□□□ -2.12
COL6A5A8TX70 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC1.82□□□□□ -2.12
COL6A5A8TX70 DDX10P1-201ENST00000448545 1933 ntBASIC1.82□□□□□ -2.12
COL6A5A8TX70 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
COL6A5A8TX70 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
COL6A5A8TX70 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC1.82□□□□□ -2.12
COL6A5A8TX70 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
COL6A5A8TX70 FRG1BP-201ENST00000278882 761 ntBASIC1.82□□□□□ -2.12
COL6A5A8TX70 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC1.82□□□□□ -2.12
COL6A5A8TX70 RN7SKP44-201ENST00000363602 316 ntBASIC1.82□□□□□ -2.12
COL6A5A8TX70 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
COL6A5A8TX70 SNORA46-201ENST00000384762 135 ntBASIC1.82□□□□□ -2.12
COL6A5A8TX70 RNU2-68P-201ENST00000410878 191 ntBASIC1.82□□□□□ -2.12
COL6A5A8TX70 RHEBP3-201ENST00000411920 351 ntBASIC1.82□□□□□ -2.12
COL6A5A8TX70 RPS7P13-201ENST00000413955 498 ntBASIC1.82□□□□□ -2.12
COL6A5A8TX70 PTP4A1P7-201ENST00000423476 514 ntBASIC1.82□□□□□ -2.12
COL6A5A8TX70 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC1.82□□□□□ -2.12
COL6A5A8TX70 AC079776.3-201ENST00000450665 370 ntBASIC1.82□□□□□ -2.12
COL6A5A8TX70 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC1.82□□□□□ -2.12
COL6A5A8TX70 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC1.82□□□□□ -2.12
COL6A5A8TX70 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC1.82□□□□□ -2.12
COL6A5A8TX70 AC104574.1-201ENST00000561182 925 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
COL6A5A8TX70 AL591516.1-201ENST00000611326 274 ntBASIC1.82□□□□□ -2.12
COL6A5A8TX70 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
COL6A5A8TX70 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
COL6A5A8TX70 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
COL6A5A8TX70 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
COL6A5A8TX70 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC1.81□□□□□ -2.12
COL6A5A8TX70 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC1.81□□□□□ -2.12
COL6A5A8TX70 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
COL6A5A8TX70 RPL23AP58-201ENST00000440453 469 ntBASIC1.81□□□□□ -2.12
COL6A5A8TX70 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC1.81□□□□□ -2.12
COL6A5A8TX70 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC1.81□□□□□ -2.12
COL6A5A8TX70 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC1.81□□□□□ -2.12
COL6A5A8TX70 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC1.81□□□□□ -2.12
COL6A5A8TX70 AL162233.1-201ENST00000620014 944 ntBASIC1.81□□□□□ -2.12
COL6A5A8TX70 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC1.81□□□□□ -2.12
COL6A5A8TX70 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
COL6A5A8TX70 AL591416.1-201ENST00000404015 867 ntBASIC1.81□□□□□ -2.12
COL6A5A8TX70 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
COL6A5A8TX70 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC1.81□□□□□ -2.12
COL6A5A8TX70 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC1.81□□□□□ -2.12
COL6A5A8TX70 AL591719.1-201ENST00000444669 744 ntBASIC1.81□□□□□ -2.12
COL6A5A8TX70 AL163540.1-201ENST00000485382 386 ntBASIC1.81□□□□□ -2.12
COL6A5A8TX70 MLLT10P2-201ENST00000506434 249 ntBASIC1.81□□□□□ -2.12
COL6A5A8TX70 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC1.81□□□□□ -2.12
COL6A5A8TX70 AL022099.1-201ENST00000604551 712 ntBASIC1.81□□□□□ -2.12
COL6A5A8TX70 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC1.81□□□□□ -2.12
COL6A5A8TX70 AC244517.1-201ENST00000606030 2086 ntBASIC1.81□□□□□ -2.12
COL6A5A8TX70 TMEM161BP1-201ENST00000457388 1457 ntBASIC1.81□□□□□ -2.12
COL6A5A8TX70 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
COL6A5A8TX70 AC092326.2-201ENST00000624772 1561 ntBASIC1.8□□□□□ -2.12
COL6A5A8TX70 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
COL6A5A8TX70 AL353746.1-201ENST00000566293 6881 ntBASIC1.8□□□□□ -2.12
COL6A5A8TX70 HSP90AA5P-201ENST00000438353 2192 ntBASIC1.8□□□□□ -2.12
COL6A5A8TX70 RNU1-87P-201ENST00000363727 170 ntBASIC1.8□□□□□ -2.12
COL6A5A8TX70 AP000275.1-201ENST00000411943 390 ntBASIC1.8□□□□□ -2.12
COL6A5A8TX70 VDAC1P3-201ENST00000434069 851 ntBASIC1.8□□□□□ -2.12
COL6A5A8TX70 MTND2P29-201ENST00000438595 412 ntBASIC1.8□□□□□ -2.12
COL6A5A8TX70 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC1.8□□□□□ -2.12
COL6A5A8TX70 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC1.8□□□□□ -2.12
COL6A5A8TX70 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC1.8□□□□□ -2.12
COL6A5A8TX70 ARL2BPP2-201ENST00000550907 489 ntBASIC1.8□□□□□ -2.12
COL6A5A8TX70 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC1.8□□□□□ -2.12
COL6A5A8TX70 MIR3199-2-201ENST00000636243 86 ntBASIC1.8□□□□□ -2.12
COL6A5A8TX70 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.8□□□□□ -2.12
COL6A5A8TX70 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC1.8□□□□□ -2.12
COL6A5A8TX70 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
COL6A5A8TX70 SAGE4P-201ENST00000442271 3381 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms