Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS28Q9UK41 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 MTND4P34-201ENST00000572715 1371 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS28Q9UK41 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 AF127577.6-201ENST00000623352 2191 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS28Q9UK41 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS28Q9UK41 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS28Q9UK41 AC024560.2-201ENST00000507981 1497 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.98□□□□□ -1.77
VPS28Q9UK41 AC010733.2-201ENST00000589496 5702 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
VPS28Q9UK41 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
VPS28Q9UK41 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VPS28Q9UK41 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VPS28Q9UK41 RNU6-50P-201ENST00000362356 103 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 MIR30B-201ENST00000384850 88 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 MIR134-201ENST00000385258 73 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 RNU6-952P-201ENST00000391164 108 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 RNU2-47P-201ENST00000410649 186 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 RN7SKP159-201ENST00000410657 292 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 CYCSP19-201ENST00000411715 316 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 HIGD1AP15-201ENST00000416198 280 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 BMS1P19-201ENST00000433925 393 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC3.98□□□□□ -1.77
VPS28Q9UK41 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS28Q9UK41 SNRPEP7-201ENST00000438350 220 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VPS28Q9UK41 CDC27P1-201ENST00000445384 715 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS28Q9UK41 RSL24D1P3-201ENST00000449255 495 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 AL353691.1-201ENST00000451332 387 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 HMGN2P16-201ENST00000456802 261 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 CEACAMP4-201ENST00000457676 421 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 RPL31P50-201ENST00000471002 296 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 AC093278.1-201ENST00000494700 600 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.98□□□□□ -1.77
VPS28Q9UK41 KLHL2P1-201ENST00000508691 521 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 AC093281.2-201ENST00000510153 597 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS28Q9UK41 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.98□□□□□ -1.77
VPS28Q9UK41 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
VPS28Q9UK41 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.98□□□□□ -1.77
VPS28Q9UK41 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS28Q9UK41 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS28Q9UK41 AC022022.2-201ENST00000602989 360 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 DUXAP11-201ENST00000603858 526 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 AC034229.4-201ENST00000607861 441 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 TUSC7.1-201ENST00000610969 165 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 AL445264.1-201ENST00000621719 171 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 AL353748.2-201ENST00000622148 471 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VPS28Q9UK41 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS28Q9UK41 MAPK10-373ENST00000641983 6772 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VPS28Q9UK41 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
VPS28Q9UK41 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.98□□□□□ -1.77
VPS28Q9UK41 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VPS28Q9UK41 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
VPS28Q9UK41 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS28Q9UK41 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS28Q9UK41 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
VPS28Q9UK41 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS28Q9UK41 AL353746.1-201ENST00000566293 6881 ntBASIC3.97□□□□□ -1.77
VPS28Q9UK41 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS28Q9UK41 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS28Q9UK41 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
VPS28Q9UK41 RNU1-18P-201ENST00000363062 164 ntBASIC3.97□□□□□ -1.77
VPS28Q9UK41 MIR554-201ENST00000384874 96 ntBASIC3.97□□□□□ -1.77
VPS28Q9UK41 RNA5SP129-201ENST00000410276 118 ntBASIC3.97□□□□□ -1.77
VPS28Q9UK41 RPS3AP25-201ENST00000411660 793 ntBASIC3.97□□□□□ -1.77
VPS28Q9UK41 TRBV24OR9-2-201ENST00000416632 435 ntBASIC3.97□□□□□ -1.77
VPS28Q9UK41 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS28Q9UK41 AC079780.1-201ENST00000428259 207 ntBASIC3.97□□□□□ -1.77
VPS28Q9UK41 ZYG11AP1-201ENST00000430329 837 ntBASIC3.97□□□□□ -1.77
VPS28Q9UK41 MTND1P32-201ENST00000433043 938 ntBASIC3.97□□□□□ -1.77
VPS28Q9UK41 MTCYBP45-201ENST00000435243 565 ntBASIC3.97□□□□□ -1.77
VPS28Q9UK41 AL662791.1-201ENST00000441992 928 ntBASIC3.97□□□□□ -1.77
VPS28Q9UK41 BX322784.1-201ENST00000455793 1077 ntBASIC3.97□□□□□ -1.77
VPS28Q9UK41 MEMO1P3-201ENST00000459811 302 ntBASIC3.97□□□□□ -1.77
VPS28Q9UK41 RNA5SP468-201ENST00000516782 93 ntBASIC3.97□□□□□ -1.77
VPS28Q9UK41 RNU6-352P-201ENST00000516908 107 ntBASIC3.97□□□□□ -1.77
VPS28Q9UK41 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS28Q9UK41 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
VPS28Q9UK41 OR6C7P-201ENST00000547875 934 ntBASIC3.97□□□□□ -1.77
VPS28Q9UK41 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS28Q9UK41 AC005344.1-201ENST00000613391 459 ntBASIC3.97□□□□□ -1.77
VPS28Q9UK41 AC011330.2-201ENST00000621680 635 ntBASIC3.97□□□□□ -1.77
VPS28Q9UK41 AL672296.1-201ENST00000427780 2158 ntBASIC3.97□□□□□ -1.77
VPS28Q9UK41 AC066616.2-201ENST00000559334 1481 ntBASIC3.97□□□□□ -1.77
VPS28Q9UK41 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.97□□□□□ -1.77
VPS28Q9UK41 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS28Q9UK41 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
VPS28Q9UK41 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS28Q9UK41 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.97□□□□□ -1.77
VPS28Q9UK41 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.96□□□□□ -1.77
VPS28Q9UK41 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms