Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 AC032011.1-201ENST00000611703 1549 ntBASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 RNU6-1329P-201ENST00000365664 107 ntBASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 RNU6-472P-201ENST00000384299 107 ntBASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 Y_RNA.515-201ENST00000384535 112 ntBASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 AP003170.5-201ENST00000397185 335 ntBASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 AC092447.6-201ENST00000414578 210 ntBASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 RPL35AP3-201ENST00000414680 288 ntBASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 RPS26P47-201ENST00000427219 348 ntBASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 RPL7L1P1-201ENST00000448259 785 ntBASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 GEMIN2P1-201ENST00000454246 752 ntBASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 ERHP1-201ENST00000523006 310 ntBASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 MEG8-215ENST00000555354 469 ntTSL 3 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 AC084783.1-201ENST00000565846 910 ntBASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 MIR4512-201ENST00000583257 77 ntBASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 AC078899.3-201ENST00000599065 212 ntBASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 MIR4272-201ENST00000635924 64 ntBASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 AL662795.2-201ENST00000624252 3706 ntBASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 AC008669.1-201ENST00000565823 2178 ntBASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 AC015799.1-201ENST00000622996 3122 ntBASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 IARS-213ENST00000627121 4587 ntTSL 5 BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 EOGT-210ENST00000615922 1931 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 OR56A5-201ENST00000340110 738 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 SNORA70H-201ENST00000383910 135 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 SNORA70J-201ENST00000384182 135 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 RNA5SP56-201ENST00000410277 118 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 RNU4-34P-201ENST00000410431 124 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 OR2AT2P-201ENST00000413438 905 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 CYCSP10-201ENST00000417973 294 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 RPS27AP12-201ENST00000429552 465 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 AC126120.1-201ENST00000431082 470 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 PTMAP6-201ENST00000439110 327 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 DAP3P1-201ENST00000441522 278 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 TPT1P13-201ENST00000449760 499 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 RNU7-187P-201ENST00000458985 68 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 RPS23P1-201ENST00000491662 432 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 RNU7-4P-201ENST00000516961 62 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 CDH12P4-201ENST00000517835 295 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 CDH12P3-201ENST00000517935 295 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 CDH12P1-201ENST00000518435 295 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 AC040926.1-201ENST00000530195 238 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 AC127381.1-201ENST00000555979 939 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 AC007619.2-201ENST00000605743 379 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 AC002044.1-201ENST00000606707 158 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 TCL6_3.1-201ENST00000619064 137 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 AC012254.3-201ENST00000591183 2117 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 GUCY1B2-204ENST00000531898 1979 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 AC233263.6-201ENST00000631132 1963 ntBASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 FTO-215ENST00000636491 1676 ntTSL 5 BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
LIMD1Q9UGP4 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms