Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 LYST-202ENST00000389794 12985 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 NACAP2-201ENST00000318548 624 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 RNA5SP391-201ENST00000363456 119 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 BMPR1APS1-201ENST00000403332 1598 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AC007283.2-201ENST00000424739 197 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AC097063.1-201ENST00000426714 1797 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 RPS27AP12-201ENST00000429552 465 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 MTND6P18-201ENST00000439477 513 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 EEF1A1P1-201ENST00000447052 739 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 RPL7P52-201ENST00000449200 742 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AL162591.2-201ENST00000449634 317 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AP001992.1-205ENST00000462248 379 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AC055855.1-201ENST00000489563 579 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 RN7SL604P-201ENST00000492589 296 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 RNU1-6P-201ENST00000516290 144 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AC105029.1-201ENST00000520250 669 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AP003497.1-201ENST00000528472 562 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AC105129.1-201ENST00000560250 297 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AC133552.1-201ENST00000569988 4007 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 MTCYBP13-201ENST00000578634 1093 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 VN1R85P-201ENST00000601587 426 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 KC877982.1-201ENST00000602313 470 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AL161729.3-201ENST00000603533 673 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 OR6R2P-201ENST00000609216 300 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AL354950.2-201ENST00000617939 290 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 AC009229.4-201ENST00000623854 1947 ntBASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 LDHA-225ENST00000625635 141 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC6.12□□□□□ -1.43
CCDC87Q9NVE4 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 ELL2P4-201ENST00000446870 1376 ntBASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 RPL7P26-201ENST00000333817 754 ntBASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 RNU6-1243P-201ENST00000364028 107 ntBASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 Y_RNA.234-201ENST00000364409 97 ntBASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 RNA5SP509-201ENST00000364577 119 ntBASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 Y_RNA.255-201ENST00000364581 97 ntBASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 SNORA37-201ENST00000384504 129 ntBASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 AL136116.1-201ENST00000403591 381 ntBASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 AL162578.1-201ENST00000406202 378 ntBASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 RN7SKP140-201ENST00000411196 284 ntBASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 NDUFA5P4-201ENST00000436704 385 ntBASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 MTND1P18-201ENST00000448191 573 ntBASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 AC021660.1-201ENST00000465006 554 ntBASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 RFPL4AP5-201ENST00000514977 504 ntBASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 AC093853.1-201ENST00000515689 483 ntBASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 AP005639.2-201ENST00000527592 928 ntBASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 MIR92B-201ENST00000607575 96 ntBASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 uc_338.12-201ENST00000616344 181 ntBASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 AC009902.3-201ENST00000606235 2172 ntBASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 AC006020.1-201ENST00000420179 1854 ntBASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC87Q9NVE4 TLK1P1-201ENST00000456760 2440 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 AC104118.1-201ENST00000607625 1589 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms