Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 OR51AB1P-201ENST00000429046 620 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 RPL23AP74-201ENST00000437246 471 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 AC092427.1-201ENST00000439177 601 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 AC098824.1-201ENST00000453565 980 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 USP9YP34-201ENST00000453983 808 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 snoU13.24-201ENST00000458998 104 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 AC092757.1-201ENST00000467293 467 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 AC069499.1-201ENST00000489433 509 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 AC068305.1-201ENST00000497406 726 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 AC108941.1-201ENST00000502853 530 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 SNORA70.24-201ENST00000517233 118 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 AP003461.1-201ENST00000528866 78 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 OR5B10P-201ENST00000532869 642 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 AC008127.2-201ENST00000549925 1075 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 ELOCP35-201ENST00000604289 336 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 SNORA62.6-201ENST00000606322 83 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 AC080013.4-201ENST00000607624 649 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 AC079416.3-201ENST00000624479 549 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 DDX43P2-201ENST00000604753 1354 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 MIR491-201ENST00000384877 84 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 PTMAP5-201ENST00000393073 333 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 RNU6-757P-201ENST00000410334 100 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AC005517.2-201ENST00000424673 553 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AP000907.1-201ENST00000428428 510 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AL159987.2-201ENST00000432754 307 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AC068587.2-201ENST00000478386 781 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 RPS26P15-201ENST00000488067 348 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 RAC1P2-201ENST00000511164 579 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AC006499.2-201ENST00000513470 337 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 IGKV2-23-201ENST00000518729 323 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AC008802.1-201ENST00000519121 791 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 UBTFL10-201ENST00000528532 562 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AC090877.1-201ENST00000561418 344 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 VN1R92P-201ENST00000598511 928 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AC010591.1-201ENST00000603941 649 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AL137849.1-201ENST00000604767 169 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AL009028.1-201ENST00000604895 802 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AL158042.1-201ENST00000605338 460 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AC245297.2-201ENST00000610119 565 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 MIR7975-201ENST00000619350 68 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AC009318.4-201ENST00000620496 486 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AC243312.2-201ENST00000623340 601 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AC007490.1-201ENST00000624321 703 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 CYP3A51P-201ENST00000633513 256 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 MTND5P1-201ENST00000445440 1375 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 AC073346.2-201ENST00000624724 2058 ntBASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC3Q9BQI4 MTND5P3-201ENST00000438536 1800 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 EXOC5P1-201ENST00000510543 1969 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 SOD2P1-201ENST00000396543 562 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 HLFP1-201ENST00000402375 499 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 MTND4LP20-201ENST00000402379 270 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 MIR1284-201ENST00000408337 120 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 MTCYBP38-201ENST00000417160 1123 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 MTCYBP24-201ENST00000420387 1106 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 AL049610.1-201ENST00000423374 372 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 RPS6P15-201ENST00000431996 751 ntBASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms