Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 BX679664.1-201ENST00000434429 253 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 AC093155.1-201ENST00000440164 826 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC43Q96MW1 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC43Q96MW1 AC008264.1-201ENST00000447612 367 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 SSXP4-201ENST00000451349 245 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 AC006539.3-201ENST00000454258 129 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 AC010401.1-201ENST00000463867 348 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 AC104629.1-201ENST00000494226 508 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC43Q96MW1 AC096751.1-202ENST00000502691 1067 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 AC112198.1-201ENST00000505369 1220 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.79□□□□□ -1.8
CCDC43Q96MW1 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC43Q96MW1 AP006245.1-201ENST00000522549 120 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 NDUFS5P6-201ENST00000529136 295 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 EEF1B2P4-201ENST00000551398 348 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC43Q96MW1 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.79□□□□□ -1.8
CCDC43Q96MW1 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC43Q96MW1 AC104072.1-201ENST00000568817 668 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC43Q96MW1 SRGNP1-201ENST00000603392 451 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 AC055876.5-201ENST00000605667 259 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 MIR8058-201ENST00000615737 89 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 AL157770.1-201ENST00000623049 439 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 AC004777.1-201ENST00000624317 287 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 CYP3A51P-201ENST00000633513 256 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC43Q96MW1 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC43Q96MW1 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC43Q96MW1 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC43Q96MW1 AC138915.3-201ENST00000562908 1389 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC43Q96MW1 AL049780.3-201ENST00000624612 1583 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC43Q96MW1 RNA5SP295-201ENST00000362655 121 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 RNU6-707P-201ENST00000364647 95 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC43Q96MW1 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC43Q96MW1 RNU6-1074P-201ENST00000383995 104 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 TAF9BP1-201ENST00000396646 746 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 RN7SKP111-201ENST00000410349 271 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 AC096533.1-201ENST00000411645 353 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 YPEL5P1-201ENST00000419731 367 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC43Q96MW1 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 USP9YP31-201ENST00000431405 881 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC43Q96MW1 PTGES3P1-201ENST00000439531 483 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 MTCYBP42-201ENST00000444653 1130 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC43Q96MW1 AL445669.2-201ENST00000454425 421 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 RPL6P9-201ENST00000466502 859 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 RPL7P47-201ENST00000497299 556 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC43Q96MW1 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC43Q96MW1 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC43Q96MW1 RNU1-61P-201ENST00000516107 151 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 IGKV2-26-201ENST00000518305 343 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 CCNG2P1-201ENST00000549521 1000 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 AC010198.2-201ENST00000550612 259 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC43Q96MW1 LARP7P2-201ENST00000575306 125 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 MIR5708-201ENST00000579723 85 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC43Q96MW1 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC43Q96MW1 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC43Q96MW1 AC022146.1-201ENST00000595307 847 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 AL162713.1-201ENST00000604480 262 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 AC011816.2-201ENST00000607089 556 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 AP001521.1-201ENST00000609150 300 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC43Q96MW1 AP003476.1-201ENST00000623984 516 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
CCDC43Q96MW1 MTCO1P23-201ENST00000415223 1526 ntBASIC3.78□□□□□ -1.8
CCDC43Q96MW1 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC43Q96MW1 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC43Q96MW1 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC43Q96MW1 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
CCDC43Q96MW1 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC43Q96MW1 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
CCDC43Q96MW1 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
CCDC43Q96MW1 SNORD46.1-201ENST00000364139 104 ntBASIC3.77□□□□□ -1.81
CCDC43Q96MW1 RNU1-33P-201ENST00000364249 162 ntBASIC3.77□□□□□ -1.81
CCDC43Q96MW1 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC43Q96MW1 MIR34B-201ENST00000385076 84 ntBASIC3.77□□□□□ -1.81
CCDC43Q96MW1 PTMAP5-201ENST00000393073 333 ntBASIC3.77□□□□□ -1.81
CCDC43Q96MW1 AL079342.2-201ENST00000403367 482 ntBASIC3.77□□□□□ -1.81
CCDC43Q96MW1 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC43Q96MW1 RPS3AP25-201ENST00000411660 793 ntBASIC3.77□□□□□ -1.81
CCDC43Q96MW1 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC43Q96MW1 DUTP6-201ENST00000425573 462 ntBASIC3.77□□□□□ -1.81
CCDC43Q96MW1 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC43Q96MW1 SLC31A1P1-201ENST00000451221 567 ntBASIC3.77□□□□□ -1.81
CCDC43Q96MW1 RPS4XP2-201ENST00000458402 793 ntBASIC3.77□□□□□ -1.81
CCDC43Q96MW1 AC092757.1-201ENST00000467293 467 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms