Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS39Q96JC1 AC087894.1-201ENST00000538359 518 ntBASIC3.45□□□□□ -1.86
VPS39Q96JC1 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.45□□□□□ -1.86
VPS39Q96JC1 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS39Q96JC1 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.45□□□□□ -1.86
VPS39Q96JC1 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS39Q96JC1 AC067852.3-201ENST00000589177 561 ntBASIC3.45□□□□□ -1.86
VPS39Q96JC1 AC006557.5-201ENST00000603126 811 ntBASIC3.45□□□□□ -1.86
VPS39Q96JC1 AC009570.1-201ENST00000609599 745 ntBASIC3.45□□□□□ -1.86
VPS39Q96JC1 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
VPS39Q96JC1 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS39Q96JC1 AL049777.1-201ENST00000622740 518 ntBASIC3.45□□□□□ -1.86
VPS39Q96JC1 MFSD8-245ENST00000641743 948 ntBASIC3.45□□□□□ -1.86
VPS39Q96JC1 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
VPS39Q96JC1 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS39Q96JC1 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
VPS39Q96JC1 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.45□□□□□ -1.86
VPS39Q96JC1 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS39Q96JC1 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS39Q96JC1 AC032011.1-201ENST00000611703 1549 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.44□□□□□ -1.86
VPS39Q96JC1 CUL1P1-201ENST00000509510 2425 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.44□□□□□ -1.86
VPS39Q96JC1 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
VPS39Q96JC1 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
VPS39Q96JC1 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
VPS39Q96JC1 RNU6-1000P-201ENST00000391066 106 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 AL133264.1-201ENST00000407157 562 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 U3.42-201ENST00000408746 214 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 RNU6-575P-201ENST00000411326 105 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 RPS15AP38-201ENST00000413110 372 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 RPL7P46-201ENST00000425129 740 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 MTCO1P39-201ENST00000426148 480 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.44□□□□□ -1.86
VPS39Q96JC1 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS39Q96JC1 AC007389.2-201ENST00000434630 306 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 HSPE1P28-201ENST00000443139 211 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 MTCO1P48-201ENST00000448024 1096 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 BTF3P5-201ENST00000457252 467 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 AC104982.1-201ENST00000478775 574 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 RPS4XP22-201ENST00000480755 780 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 AC068724.1-201ENST00000487100 792 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 AP001317.1-201ENST00000531194 960 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS39Q96JC1 AP005205.1-201ENST00000563503 508 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS39Q96JC1 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS39Q96JC1 AC126365.2-201ENST00000580630 379 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC3.44□□□□□ -1.86
VPS39Q96JC1 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS39Q96JC1 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS39Q96JC1 AC106900.2-201ENST00000604994 317 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 AL133445.2-201ENST00000611191 527 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 MIR6076-201ENST00000617521 113 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC3.44□□□□□ -1.86
VPS39Q96JC1 AC026634.1-201ENST00000634369 198 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS39Q96JC1 AL161912.2-201ENST00000565707 3007 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 AC017071.1-201ENST00000564407 2204 ntBASIC3.44□□□□□ -1.86
VPS39Q96JC1 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
VPS39Q96JC1 MAPK10-322ENST00000641485 4530 ntBASIC3.43□□□□□ -1.86
VPS39Q96JC1 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.43□□□□□ -1.86
VPS39Q96JC1 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.43□□□□□ -1.86
VPS39Q96JC1 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
VPS39Q96JC1 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
VPS39Q96JC1 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
VPS39Q96JC1 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
VPS39Q96JC1 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
VPS39Q96JC1 Y_RNA.126-201ENST00000363382 111 ntBASIC3.43□□□□□ -1.86
VPS39Q96JC1 RNU6-173P-201ENST00000364215 104 ntBASIC3.43□□□□□ -1.86
VPS39Q96JC1 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
VPS39Q96JC1 AC234772.1-201ENST00000377927 937 ntBASIC3.43□□□□□ -1.86
VPS39Q96JC1 RSL24D1P1-201ENST00000404972 493 ntBASIC3.43□□□□□ -1.86
VPS39Q96JC1 FAT1P1-201ENST00000406588 507 ntBASIC3.43□□□□□ -1.86
VPS39Q96JC1 RNA5SP31-201ENST00000411144 127 ntBASIC3.43□□□□□ -1.86
VPS39Q96JC1 AL136133.1-201ENST00000413694 376 ntBASIC3.43□□□□□ -1.86
VPS39Q96JC1 RPS15AP6-201ENST00000420703 385 ntBASIC3.43□□□□□ -1.86
VPS39Q96JC1 DPPA2P1-201ENST00000428060 556 ntBASIC3.43□□□□□ -1.86
VPS39Q96JC1 AL035246.1-201ENST00000433554 1255 ntBASIC3.43□□□□□ -1.86
VPS39Q96JC1 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.43□□□□□ -1.86
VPS39Q96JC1 AC008264.1-201ENST00000447612 367 ntBASIC3.43□□□□□ -1.86
VPS39Q96JC1 AC097262.1-201ENST00000452559 548 ntBASIC3.43□□□□□ -1.86
VPS39Q96JC1 AC010468.1-201ENST00000461022 817 ntBASIC3.43□□□□□ -1.86
VPS39Q96JC1 RPL7P15-201ENST00000461190 712 ntBASIC3.43□□□□□ -1.86
VPS39Q96JC1 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.43□□□□□ -1.86
VPS39Q96JC1 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.43□□□□□ -1.86
VPS39Q96JC1 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS39Q96JC1 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.43□□□□□ -1.86
VPS39Q96JC1 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.43□□□□□ -1.86
VPS39Q96JC1 CD69-203ENST00000536709 1020 ntTSL 2 BASIC3.43□□□□□ -1.86
VPS39Q96JC1 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.43□□□□□ -1.86
VPS39Q96JC1 AC053481.3-201ENST00000577881 843 ntBASIC3.43□□□□□ -1.86
VPS39Q96JC1 RPAP2P1-201ENST00000603626 1168 ntBASIC3.43□□□□□ -1.86
VPS39Q96JC1 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC3.43□□□□□ -1.86
VPS39Q96JC1 AL353748.2-201ENST00000622148 471 ntBASIC3.43□□□□□ -1.86
VPS39Q96JC1 CYP3A51P-201ENST00000633513 256 ntBASIC3.43□□□□□ -1.86
VPS39Q96JC1 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
VPS39Q96JC1 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS39Q96JC1 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.42□□□□□ -1.86
VPS39Q96JC1 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms