Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC1.43□□□□□ -2.18
LINC00643Q86TS7 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
LINC00643Q86TS7 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
LINC00643Q86TS7 CASP3-203ENST00000393588 677 ntTSL 4 BASIC1.43□□□□□ -2.18
LINC00643Q86TS7 AL591416.1-201ENST00000404015 867 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 AL023807.1-201ENST00000407932 359 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC1.43□□□□□ -2.18
LINC00643Q86TS7 TEX41-203ENST00000420472 765 ntTSL 3 BASIC1.43□□□□□ -2.18
LINC00643Q86TS7 YY1P1-201ENST00000427625 668 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC1.43□□□□□ -2.18
LINC00643Q86TS7 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC1.43□□□□□ -2.18
LINC00643Q86TS7 RPS24P13-201ENST00000442520 397 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 RPL21P89-201ENST00000444021 467 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 RAB28P3-201ENST00000448325 597 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC1.43□□□□□ -2.18
LINC00643Q86TS7 RNU7-27P-201ENST00000459281 62 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 RN7SL168P-201ENST00000463821 279 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 RN7SL132P-201ENST00000478131 296 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 AC007686.1-201ENST00000488511 463 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 AC083906.5-201ENST00000503722 328 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 HMGB3P17-201ENST00000504195 649 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 AC096571.1-202ENST00000506634 735 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 XKRY-201ENST00000510392 1100 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC1.43□□□□□ -2.18
LINC00643Q86TS7 RN7SKP31-201ENST00000516354 278 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC1.43□□□□□ -2.18
LINC00643Q86TS7 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC1.43□□□□□ -2.18
LINC00643Q86TS7 OR5AK3P-201ENST00000527486 1297 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC1.43□□□□□ -2.18
LINC00643Q86TS7 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC1.43□□□□□ -2.18
LINC00643Q86TS7 AC007954.1-201ENST00000554198 494 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC1.43□□□□□ -2.18
LINC00643Q86TS7 OR4K7P-201ENST00000580232 945 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC1.43□□□□□ -2.18
LINC00643Q86TS7 AC061975.8-201ENST00000587058 721 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC1.43□□□□□ -2.18
LINC00643Q86TS7 AL392112.1-201ENST00000605115 829 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 BNIP3P7-201ENST00000605641 516 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC1.43□□□□□ -2.18
LINC00643Q86TS7 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC1.43□□□□□ -2.18
LINC00643Q86TS7 AC243312.2-201ENST00000623340 601 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 AC091932.3-201ENST00000624223 323 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC1.43□□□□□ -2.18
LINC00643Q86TS7 FAM157B-203ENST00000639350 358 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.43□□□□□ -2.18
LINC00643Q86TS7 ZNF833P-201ENST00000424938 1494 ntBASIC1.43□□□□□ -2.18
LINC00643Q86TS7 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
LINC00643Q86TS7 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.42□□□□□ -2.18
LINC00643Q86TS7 ZNF90P1-201ENST00000480493 1951 ntBASIC1.42□□□□□ -2.18
LINC00643Q86TS7 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
LINC00643Q86TS7 SNORA62.3-201ENST00000365110 153 ntBASIC1.42□□□□□ -2.18
LINC00643Q86TS7 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC1.42□□□□□ -2.18
LINC00643Q86TS7 RPS4XP3-201ENST00000398541 413 ntBASIC1.42□□□□□ -2.18
LINC00643Q86TS7 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
LINC00643Q86TS7 MTCYBP7-201ENST00000419540 1134 ntBASIC1.42□□□□□ -2.18
LINC00643Q86TS7 MTCYBP24-201ENST00000420387 1106 ntBASIC1.42□□□□□ -2.18
LINC00643Q86TS7 AC114973.1-201ENST00000429057 632 ntBASIC1.42□□□□□ -2.18
LINC00643Q86TS7 AL117339.2-201ENST00000430475 180 ntBASIC1.42□□□□□ -2.18
LINC00643Q86TS7 SDR42E1P3-201ENST00000438345 502 ntBASIC1.42□□□□□ -2.18
LINC00643Q86TS7 RPL21P23-201ENST00000446654 460 ntBASIC1.42□□□□□ -2.18
LINC00643Q86TS7 COX6CP12-201ENST00000446748 202 ntBASIC1.42□□□□□ -2.18
LINC00643Q86TS7 AL136380.1-201ENST00000447970 162 ntBASIC1.42□□□□□ -2.18
LINC00643Q86TS7 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.42□□□□□ -2.18
LINC00643Q86TS7 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC1.42□□□□□ -2.18
LINC00643Q86TS7 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC1.42□□□□□ -2.18
LINC00643Q86TS7 AC109329.2-201ENST00000519658 482 ntBASIC1.42□□□□□ -2.18
LINC00643Q86TS7 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC1.42□□□□□ -2.18
LINC00643Q86TS7 OR10V3P-201ENST00000525712 725 ntBASIC1.42□□□□□ -2.18
LINC00643Q86TS7 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC1.42□□□□□ -2.18
LINC00643Q86TS7 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.42□□□□□ -2.18
LINC00643Q86TS7 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC1.42□□□□□ -2.18
LINC00643Q86TS7 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC1.42□□□□□ -2.18
LINC00643Q86TS7 AC090897.2-201ENST00000581715 130 ntBASIC1.42□□□□□ -2.18
LINC00643Q86TS7 MIR3176-201ENST00000582210 90 ntBASIC1.42□□□□□ -2.18
LINC00643Q86TS7 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC1.42□□□□□ -2.18
LINC00643Q86TS7 SS18L2P2-201ENST00000583960 235 ntBASIC1.42□□□□□ -2.18
LINC00643Q86TS7 MIR3117-201ENST00000584034 78 ntBASIC1.42□□□□□ -2.18
LINC00643Q86TS7 AL035413.2-201ENST00000604801 525 ntBASIC1.42□□□□□ -2.18
LINC00643Q86TS7 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC1.42□□□□□ -2.18
LINC00643Q86TS7 FAM25E-202ENST00000608562 189 ntBASIC1.42□□□□□ -2.18
LINC00643Q86TS7 AC005332.10-201ENST00000612725 619 ntBASIC1.42□□□□□ -2.18
LINC00643Q86TS7 AC025016.1-201ENST00000616746 682 ntBASIC1.42□□□□□ -2.18
LINC00643Q86TS7 U73479.1-201ENST00000618062 168 ntBASIC1.42□□□□□ -2.18
LINC00643Q86TS7 AC018755.4-201ENST00000619715 454 ntBASIC1.42□□□□□ -2.18
LINC00643Q86TS7 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
LINC00643Q86TS7 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC1.42□□□□□ -2.18
LINC00643Q86TS7 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC1.42□□□□□ -2.18
LINC00643Q86TS7 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
LINC00643Q86TS7 AL354685.2-201ENST00000448218 1447 ntBASIC1.41□□□□□ -2.18
LINC00643Q86TS7 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.41□□□□□ -2.18
LINC00643Q86TS7 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC1.41□□□□□ -2.18
LINC00643Q86TS7 AL359837.1-201ENST00000381357 287 ntBASIC1.41□□□□□ -2.18
LINC00643Q86TS7 SNORA54-201ENST00000384281 123 ntBASIC1.41□□□□□ -2.18
LINC00643Q86TS7 MIR676-201ENST00000390702 67 ntBASIC1.41□□□□□ -2.18
LINC00643Q86TS7 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC1.41□□□□□ -2.18
LINC00643Q86TS7 RPL17P12-201ENST00000413391 526 ntBASIC1.41□□□□□ -2.18
LINC00643Q86TS7 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC1.41□□□□□ -2.18
LINC00643Q86TS7 AL139413.1-201ENST00000421309 217 ntBASIC1.41□□□□□ -2.18
LINC00643Q86TS7 BLOC1S2P1-201ENST00000428431 301 ntBASIC1.41□□□□□ -2.18
LINC00643Q86TS7 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC1.41□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms