Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 HMGB3P30-201ENST00000457863 606 ntBASIC3.13□□□□□ -1.91
SHHQ15465 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC3.13□□□□□ -1.91
SHHQ15465 SNRPGP3-201ENST00000469405 227 ntBASIC3.13□□□□□ -1.91
SHHQ15465 TRBV8-2-201ENST00000475637 270 ntBASIC3.13□□□□□ -1.91
SHHQ15465 AC092451.1-201ENST00000480211 153 ntBASIC3.13□□□□□ -1.91
SHHQ15465 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC3.13□□□□□ -1.91
SHHQ15465 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC3.13□□□□□ -1.91
SHHQ15465 RNA5SP148-201ENST00000516527 94 ntBASIC3.13□□□□□ -1.91
SHHQ15465 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.13□□□□□ -1.91
SHHQ15465 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC3.13□□□□□ -1.91
SHHQ15465 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC3.13□□□□□ -1.91
SHHQ15465 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.13□□□□□ -1.91
SHHQ15465 CENPUP2-201ENST00000555897 1186 ntBASIC3.13□□□□□ -1.91
SHHQ15465 AC040174.2-201ENST00000602701 465 ntBASIC3.13□□□□□ -1.91
SHHQ15465 AL365503.1-201ENST00000605247 905 ntBASIC3.13□□□□□ -1.91
SHHQ15465 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.13□□□□□ -1.91
SHHQ15465 AL162233.1-201ENST00000620014 944 ntBASIC3.13□□□□□ -1.91
SHHQ15465 AC009269.6-201ENST00000621778 588 ntBASIC3.13□□□□□ -1.91
SHHQ15465 AC138649.5-201ENST00000637456 137 ntBASIC3.13□□□□□ -1.91
SHHQ15465 ZNF658B-202ENST00000615961 3375 ntBASIC3.13□□□□□ -1.91
SHHQ15465 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
SHHQ15465 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
SHHQ15465 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.12□□□□□ -1.91
SHHQ15465 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.12□□□□□ -1.91
SHHQ15465 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
SHHQ15465 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.12□□□□□ -1.91
SHHQ15465 AC011978.2-201ENST00000569835 2054 ntBASIC3.12□□□□□ -1.91
SHHQ15465 SNORA27.3-201ENST00000364937 134 ntBASIC3.12□□□□□ -1.91
SHHQ15465 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
SHHQ15465 RNU6-40P-201ENST00000384254 107 ntBASIC3.12□□□□□ -1.91
SHHQ15465 PTGES3P2-201ENST00000407942 482 ntBASIC3.12□□□□□ -1.91
SHHQ15465 U3.42-201ENST00000408746 214 ntBASIC3.12□□□□□ -1.91
SHHQ15465 RPL7P8-201ENST00000411964 730 ntBASIC3.12□□□□□ -1.91
SHHQ15465 AC010385.1-201ENST00000412374 256 ntBASIC3.12□□□□□ -1.91
SHHQ15465 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC3.12□□□□□ -1.91
SHHQ15465 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC3.12□□□□□ -1.91
SHHQ15465 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC3.12□□□□□ -1.91
SHHQ15465 TPTE2P6-202ENST00000445572 1007 ntBASIC3.12□□□□□ -1.91
SHHQ15465 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC3.12□□□□□ -1.91
SHHQ15465 HMGN2P21-201ENST00000447764 270 ntBASIC3.12□□□□□ -1.91
SHHQ15465 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.12□□□□□ -1.91
SHHQ15465 RPL29P29-201ENST00000448725 423 ntBASIC3.12□□□□□ -1.91
SHHQ15465 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.12□□□□□ -1.91
SHHQ15465 snoU13.23-201ENST00000458863 104 ntBASIC3.12□□□□□ -1.91
SHHQ15465 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.12□□□□□ -1.91
SHHQ15465 AP001025.2-201ENST00000490908 477 ntBASIC3.12□□□□□ -1.91
SHHQ15465 AC005351.1-201ENST00000511152 786 ntBASIC3.12□□□□□ -1.91
SHHQ15465 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.12□□□□□ -1.91
SHHQ15465 RN7SKP244-201ENST00000516513 307 ntBASIC3.12□□□□□ -1.91
SHHQ15465 ATP5F1P5-201ENST00000526403 760 ntBASIC3.12□□□□□ -1.91
SHHQ15465 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
SHHQ15465 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC3.12□□□□□ -1.91
SHHQ15465 AL136520.1-202ENST00000555494 763 ntBASIC3.12□□□□□ -1.91
SHHQ15465 CYP2C60P-201ENST00000566088 139 ntBASIC3.12□□□□□ -1.91
SHHQ15465 AP000919.1-202ENST00000581139 1264 ntBASIC3.12□□□□□ -1.91
SHHQ15465 CBX3P2-202ENST00000583365 535 ntBASIC3.12□□□□□ -1.91
SHHQ15465 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.12□□□□□ -1.91
SHHQ15465 AC113194.1-201ENST00000606037 500 ntBASIC3.12□□□□□ -1.91
SHHQ15465 AC080188.3-201ENST00000624842 748 ntBASIC3.12□□□□□ -1.91
SHHQ15465 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.12□□□□□ -1.91
SHHQ15465 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
SHHQ15465 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC3.12□□□□□ -1.91
SHHQ15465 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.12□□□□□ -1.91
SHHQ15465 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
SHHQ15465 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
SHHQ15465 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
SHHQ15465 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SHHQ15465 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.11□□□□□ -1.91
SHHQ15465 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.11□□□□□ -1.91
SHHQ15465 RNA5SP391-201ENST00000363456 119 ntBASIC3.11□□□□□ -1.91
SHHQ15465 SNORA9.2-201ENST00000365361 133 ntBASIC3.11□□□□□ -1.91
SHHQ15465 RNU6-98P-201ENST00000384173 107 ntBASIC3.11□□□□□ -1.91
SHHQ15465 RPS15AP6-201ENST00000420703 385 ntBASIC3.11□□□□□ -1.91
SHHQ15465 RPL31P12-201ENST00000422587 358 ntBASIC3.11□□□□□ -1.91
SHHQ15465 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.11□□□□□ -1.91
SHHQ15465 HSFY7P-201ENST00000432672 318 ntBASIC3.11□□□□□ -1.91
SHHQ15465 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC3.11□□□□□ -1.91
SHHQ15465 RPL7P29-201ENST00000437151 728 ntBASIC3.11□□□□□ -1.91
SHHQ15465 HSFY8P-201ENST00000437934 318 ntBASIC3.11□□□□□ -1.91
SHHQ15465 AL603825.1-201ENST00000438481 80 ntBASIC3.11□□□□□ -1.91
SHHQ15465 HMGB3P12-201ENST00000438745 556 ntBASIC3.11□□□□□ -1.91
SHHQ15465 ARL5AP2-201ENST00000444698 533 ntBASIC3.11□□□□□ -1.91
SHHQ15465 IFNA11P-201ENST00000446352 526 ntBASIC3.11□□□□□ -1.91
SHHQ15465 GXYLT1P1-201ENST00000446657 490 ntBASIC3.11□□□□□ -1.91
SHHQ15465 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC3.11□□□□□ -1.91
SHHQ15465 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC3.11□□□□□ -1.91
SHHQ15465 NIPA2P5-201ENST00000452282 464 ntBASIC3.11□□□□□ -1.91
SHHQ15465 HSFY5P-201ENST00000453726 309 ntBASIC3.11□□□□□ -1.91
SHHQ15465 RPS29P21-201ENST00000496272 170 ntBASIC3.11□□□□□ -1.91
SHHQ15465 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.11□□□□□ -1.91
SHHQ15465 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SHHQ15465 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.11□□□□□ -1.91
SHHQ15465 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SHHQ15465 HMGB1P46-201ENST00000520062 610 ntBASIC3.11□□□□□ -1.91
SHHQ15465 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.11□□□□□ -1.91
SHHQ15465 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.11□□□□□ -1.91
SHHQ15465 AC015712.3-201ENST00000559380 164 ntBASIC3.11□□□□□ -1.91
SHHQ15465 AL158211.1-201ENST00000566763 763 ntBASIC3.11□□□□□ -1.91
SHHQ15465 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC3.11□□□□□ -1.91
SHHQ15465 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms