Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RNU2-2P-201ENST00000410396 191 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.85□□□□□ -1.95
COL5A3P25940 AC013268.2-201ENST00000420753 337 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.85□□□□□ -1.95
COL5A3P25940 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC2.85□□□□□ -1.95
COL5A3P25940 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC2.85□□□□□ -1.95
COL5A3P25940 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC2.85□□□□□ -1.95
COL5A3P25940 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC2.85□□□□□ -1.95
COL5A3P25940 RNU6-548P-201ENST00000517083 115 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 AC103710.1-201ENST00000610003 901 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 U2.15-201ENST00000611544 191 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 U2.16-201ENST00000613119 191 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 U2.12-201ENST00000613778 191 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 U2.20-201ENST00000613956 192 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 U2.9-201ENST00000615427 191 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 U2.11-201ENST00000616345 191 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 U2.2-201ENST00000616535 191 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 U2.3-201ENST00000617785 191 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 U2.19-201ENST00000618602 191 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 RNU2-1-201ENST00000618664 191 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 U2.6-201ENST00000619225 191 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 U2.5-201ENST00000619465 191 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 U2.10-201ENST00000620268 191 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 AL592437.2-201ENST00000421655 2434 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 GABPAP-201ENST00000419271 1356 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 AC009501.3-201ENST00000605001 1352 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
COL5A3P25940 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.85□□□□□ -1.95
COL5A3P25940 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
COL5A3P25940 AIMP1P1-201ENST00000418670 937 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.85□□□□□ -1.95
COL5A3P25940 PTP4A1P7-201ENST00000423476 514 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC2.85□□□□□ -1.95
COL5A3P25940 CKS1BP2-201ENST00000497342 240 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 FAM92A1P2-202ENST00000504766 877 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 EMP1-206ENST00000537612 505 ntTSL 3 BASIC2.85□□□□□ -1.95
COL5A3P25940 ELOCP31-201ENST00000540463 467 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 AL389895.1-201ENST00000554127 252 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC2.85□□□□□ -1.95
COL5A3P25940 AC068446.3-201ENST00000555285 382 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.85□□□□□ -1.95
COL5A3P25940 AC015849.6-201ENST00000605454 474 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 AC009831.4-201ENST00000620744 325 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 AL356266.1-201ENST00000623311 483 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 AL160394.1-201ENST00000624765 724 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 AC009452.1-201ENST00000640823 606 ntBASIC2.85□□□□□ -1.95
COL5A3P25940 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC2.85□□□□□ -1.95
COL5A3P25940 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC2.84□□□□□ -1.95
COL5A3P25940 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.84□□□□□ -1.95
COL5A3P25940 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
COL5A3P25940 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
COL5A3P25940 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
COL5A3P25940 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC2.84□□□□□ -1.96
COL5A3P25940 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
COL5A3P25940 Y_RNA.466-201ENST00000384294 113 ntBASIC2.84□□□□□ -1.96
COL5A3P25940 SNORD88.1-201ENST00000408684 91 ntBASIC2.84□□□□□ -1.96
COL5A3P25940 AC106901.1-201ENST00000425086 698 ntBASIC2.84□□□□□ -1.96
COL5A3P25940 AC244033.1-201ENST00000426826 870 ntBASIC2.84□□□□□ -1.96
COL5A3P25940 RPS15AP28-201ENST00000435088 386 ntBASIC2.84□□□□□ -1.96
COL5A3P25940 CFTRP1-201ENST00000456646 183 ntBASIC2.84□□□□□ -1.96
COL5A3P25940 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.84□□□□□ -1.96
COL5A3P25940 IGLVIV-66-1-201ENST00000521832 460 ntBASIC2.84□□□□□ -1.96
COL5A3P25940 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC2.84□□□□□ -1.96
COL5A3P25940 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC2.84□□□□□ -1.96
COL5A3P25940 AADACP1-206ENST00000561502 1193 ntBASIC2.84□□□□□ -1.96
COL5A3P25940 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.84□□□□□ -1.96
COL5A3P25940 AC023813.4-201ENST00000607580 580 ntBASIC2.84□□□□□ -1.96
COL5A3P25940 AC123912.3-201ENST00000600907 1367 ntBASIC2.84□□□□□ -1.96
COL5A3P25940 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.84□□□□□ -1.96
COL5A3P25940 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
COL5A3P25940 AC245100.2-201ENST00000454544 1679 ntBASIC2.84□□□□□ -1.96
COL5A3P25940 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC2.83□□□□□ -1.96
COL5A3P25940 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC2.83□□□□□ -1.96
COL5A3P25940 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.83□□□□□ -1.96
COL5A3P25940 FRG1BP-201ENST00000278882 761 ntBASIC2.83□□□□□ -1.96
COL5A3P25940 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
COL5A3P25940 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC2.83□□□□□ -1.96
COL5A3P25940 AC092427.1-202ENST00000430569 476 ntBASIC2.83□□□□□ -1.96
COL5A3P25940 AC009969.1-201ENST00000438726 172 ntBASIC2.83□□□□□ -1.96
COL5A3P25940 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC2.83□□□□□ -1.96
COL5A3P25940 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.83□□□□□ -1.96
COL5A3P25940 AP003467.2-201ENST00000520175 319 ntBASIC2.83□□□□□ -1.96
COL5A3P25940 AK6P1-201ENST00000540219 478 ntBASIC2.83□□□□□ -1.96
COL5A3P25940 OR4H12P-201ENST00000556269 907 ntBASIC2.83□□□□□ -1.96
COL5A3P25940 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.83□□□□□ -1.96
COL5A3P25940 AC008432.1-201ENST00000615912 1320 ntBASIC2.83□□□□□ -1.96
COL5A3P25940 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
COL5A3P25940 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC2.83□□□□□ -1.96
COL5A3P25940 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
COL5A3P25940 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC2.82□□□□□ -1.96
COL5A3P25940 AL161781.1-201ENST00000354277 403 ntBASIC2.82□□□□□ -1.96
COL5A3P25940 RNU6-167P-201ENST00000384292 106 ntBASIC2.82□□□□□ -1.96
COL5A3P25940 SNORA17.3-201ENST00000391159 129 ntBASIC2.82□□□□□ -1.96
COL5A3P25940 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.82□□□□□ -1.96
COL5A3P25940 MORF4L1P6-201ENST00000418771 268 ntBASIC2.82□□□□□ -1.96
COL5A3P25940 IFNWP4-201ENST00000453148 294 ntBASIC2.82□□□□□ -1.96
COL5A3P25940 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC2.82□□□□□ -1.96
COL5A3P25940 AC093331.1-201ENST00000521474 169 ntBASIC2.82□□□□□ -1.96
COL5A3P25940 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC2.82□□□□□ -1.96
COL5A3P25940 AC105137.2-201ENST00000569073 466 ntBASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms