Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AC011492.1-201ENST00000600023 315 ntBASIC1.41□□□□□ -2.18
APOBP04114 AC107871.2-201ENST00000612894 502 ntBASIC1.41□□□□□ -2.18
APOBP04114 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
APOBP04114 RNU6-457P-201ENST00000363999 107 ntBASIC1.41□□□□□ -2.18
APOBP04114 AC107081.1-201ENST00000414975 361 ntBASIC1.41□□□□□ -2.18
APOBP04114 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC1.41□□□□□ -2.18
APOBP04114 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC1.41□□□□□ -2.18
APOBP04114 RAD51AP1P1-201ENST00000484195 1001 ntBASIC1.41□□□□□ -2.18
APOBP04114 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC1.41□□□□□ -2.18
APOBP04114 OR7K1P-201ENST00000546439 926 ntBASIC1.41□□□□□ -2.18
APOBP04114 MTCYBP28-201ENST00000566728 1132 ntBASIC1.41□□□□□ -2.18
APOBP04114 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC1.41□□□□□ -2.18
APOBP04114 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC1.41□□□□□ -2.18
APOBP04114 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC1.41□□□□□ -2.18
APOBP04114 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC1.41□□□□□ -2.18
APOBP04114 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC1.4□□□□□ -2.18
APOBP04114 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC1.4□□□□□ -2.18
APOBP04114 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC1.4□□□□□ -2.18
APOBP04114 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC1.4□□□□□ -2.18
APOBP04114 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC1.4□□□□□ -2.18
APOBP04114 AC135628.1-201ENST00000568867 534 ntBASIC1.4□□□□□ -2.18
APOBP04114 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC1.4□□□□□ -2.18
APOBP04114 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.18
APOBP04114 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC1.4□□□□□ -2.18
APOBP04114 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC1.4□□□□□ -2.18
APOBP04114 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
APOBP04114 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC1.4□□□□□ -2.19
APOBP04114 ATP5J2P3-201ENST00000451550 258 ntBASIC1.4□□□□□ -2.19
APOBP04114 FABP5P13-201ENST00000452144 328 ntBASIC1.4□□□□□ -2.19
APOBP04114 AC092851.1-201ENST00000535964 478 ntBASIC1.4□□□□□ -2.19
APOBP04114 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC1.4□□□□□ -2.19
APOBP04114 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC1.4□□□□□ -2.19
APOBP04114 MFSD8-245ENST00000641743 948 ntBASIC1.4□□□□□ -2.19
APOBP04114 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC1.4□□□□□ -2.19
APOBP04114 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC1.4□□□□□ -2.19
APOBP04114 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC1.4□□□□□ -2.19
APOBP04114 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC1.4□□□□□ -2.19
APOBP04114 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
APOBP04114 AC008083.2-201ENST00000546707 476 ntBASIC1.4□□□□□ -2.19
APOBP04114 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
APOBP04114 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
APOBP04114 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
APOBP04114 MIR583-201ENST00000384846 75 ntBASIC1.4□□□□□ -2.19
APOBP04114 MIR518E-201ENST00000385252 88 ntBASIC1.4□□□□□ -2.19
APOBP04114 AMD1P2-201ENST00000412936 992 ntBASIC1.4□□□□□ -2.19
APOBP04114 AL158825.1-201ENST00000414735 521 ntBASIC1.4□□□□□ -2.19
APOBP04114 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC1.4□□□□□ -2.19
APOBP04114 RPL7P54-201ENST00000438336 674 ntBASIC1.4□□□□□ -2.19
APOBP04114 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC1.4□□□□□ -2.19
APOBP04114 RAC1P5-201ENST00000512182 576 ntBASIC1.4□□□□□ -2.19
APOBP04114 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC1.4□□□□□ -2.19
APOBP04114 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.4□□□□□ -2.19
APOBP04114 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
APOBP04114 THUMPD3P1-201ENST00000506556 1480 ntBASIC1.39□□□□□ -2.19
APOBP04114 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC1.39□□□□□ -2.19
APOBP04114 AP1B1P2-201ENST00000416196 106 ntBASIC1.39□□□□□ -2.19
APOBP04114 AL034379.1-201ENST00000423216 253 ntBASIC1.39□□□□□ -2.19
APOBP04114 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC1.39□□□□□ -2.19
APOBP04114 AL118520.1-201ENST00000450770 291 ntBASIC1.39□□□□□ -2.19
APOBP04114 AC005840.1-201ENST00000498412 377 ntBASIC1.39□□□□□ -2.19
APOBP04114 XKRY-201ENST00000510392 1100 ntBASIC1.39□□□□□ -2.19
APOBP04114 AC025260.1-201ENST00000548858 430 ntBASIC1.39□□□□□ -2.19
APOBP04114 OR4T1P-201ENST00000554933 911 ntBASIC1.39□□□□□ -2.19
APOBP04114 AL627309.6-201ENST00000606857 840 ntBASIC1.39□□□□□ -2.19
APOBP04114 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC1.39□□□□□ -2.19
APOBP04114 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC1.39□□□□□ -2.19
APOBP04114 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.39□□□□□ -2.19
APOBP04114 FAT1P1-201ENST00000406588 507 ntBASIC1.39□□□□□ -2.19
APOBP04114 RPL36AP33-201ENST00000450395 310 ntBASIC1.39□□□□□ -2.19
APOBP04114 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC1.39□□□□□ -2.19
APOBP04114 OR4A45P-201ENST00000529954 901 ntBASIC1.39□□□□□ -2.19
APOBP04114 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC1.39□□□□□ -2.19
APOBP04114 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC1.39□□□□□ -2.19
APOBP04114 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC1.39□□□□□ -2.19
APOBP04114 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.39□□□□□ -2.19
APOBP04114 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
APOBP04114 AL358453.1-201ENST00000422522 250 ntBASIC1.39□□□□□ -2.19
APOBP04114 CCNHP1-201ENST00000513311 678 ntBASIC1.39□□□□□ -2.19
APOBP04114 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC1.39□□□□□ -2.19
APOBP04114 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
APOBP04114 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC1.39□□□□□ -2.19
APOBP04114 BTF3P4-201ENST00000418852 495 ntBASIC1.39□□□□□ -2.19
APOBP04114 AL390023.1-201ENST00000428836 262 ntBASIC1.39□□□□□ -2.19
APOBP04114 AC068305.1-201ENST00000497406 726 ntBASIC1.39□□□□□ -2.19
APOBP04114 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC1.39□□□□□ -2.19
APOBP04114 VTRNA2-2P-201ENST00000516091 103 ntBASIC1.39□□□□□ -2.19
APOBP04114 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
APOBP04114 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
APOBP04114 AC005539.1-201ENST00000443768 1479 ntBASIC1.38□□□□□ -2.19
APOBP04114 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
APOBP04114 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
APOBP04114 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC1.38□□□□□ -2.19
APOBP04114 SNORA41-201ENST00000384675 132 ntBASIC1.38□□□□□ -2.19
APOBP04114 RNU2-17P-201ENST00000410290 190 ntBASIC1.38□□□□□ -2.19
APOBP04114 LUZP4P1-201ENST00000415420 344 ntBASIC1.38□□□□□ -2.19
APOBP04114 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC1.38□□□□□ -2.19
APOBP04114 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC1.38□□□□□ -2.19
APOBP04114 RPS27P29-201ENST00000463110 252 ntBASIC1.38□□□□□ -2.19
APOBP04114 POU5F1P7-201ENST00000508759 541 ntBASIC1.38□□□□□ -2.19
APOBP04114 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms