Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AL079343.1-201ENST00000572358 1771 ntBASIC3.66□□□□□ -1.82
SIX3O95343 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
SIX3O95343 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.66□□□□□ -1.82
SIX3O95343 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
SIX3O95343 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.65□□□□□ -1.82
SIX3O95343 HSPA8P1-201ENST00000425843 1833 ntBASIC3.65□□□□□ -1.82
SIX3O95343 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
SIX3O95343 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
SIX3O95343 Y_RNA.311-201ENST00000365068 96 ntBASIC3.65□□□□□ -1.83
SIX3O95343 SNORD6-201ENST00000365444 73 ntBASIC3.65□□□□□ -1.83
SIX3O95343 RNA5SP283-201ENST00000365604 119 ntBASIC3.65□□□□□ -1.83
SIX3O95343 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.65□□□□□ -1.83
SIX3O95343 DEFB109C-201ENST00000382575 264 ntBASIC3.65□□□□□ -1.83
SIX3O95343 DEFB109B-201ENST00000382656 264 ntBASIC3.65□□□□□ -1.83
SIX3O95343 AL391417.1-201ENST00000404100 426 ntBASIC3.65□□□□□ -1.83
SIX3O95343 AL138878.1-201ENST00000405131 347 ntBASIC3.65□□□□□ -1.83
SIX3O95343 AC068533.2-201ENST00000411872 306 ntBASIC3.65□□□□□ -1.83
SIX3O95343 AC245052.5-201ENST00000416320 649 ntBASIC3.65□□□□□ -1.83
SIX3O95343 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC3.65□□□□□ -1.83
SIX3O95343 OR8F1P-201ENST00000425243 930 ntBASIC3.65□□□□□ -1.83
SIX3O95343 AC018644.1-201ENST00000429934 551 ntBASIC3.65□□□□□ -1.83
SIX3O95343 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.65□□□□□ -1.83
SIX3O95343 RPL21P134-201ENST00000453468 483 ntBASIC3.65□□□□□ -1.83
SIX3O95343 HMGB1P25-201ENST00000468402 607 ntBASIC3.65□□□□□ -1.83
SIX3O95343 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
SIX3O95343 WBP1LP4-201ENST00000505043 344 ntBASIC3.65□□□□□ -1.83
SIX3O95343 AC021146.1-201ENST00000511202 716 ntBASIC3.65□□□□□ -1.83
SIX3O95343 RNA5SP468-201ENST00000516782 93 ntBASIC3.65□□□□□ -1.83
SIX3O95343 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.65□□□□□ -1.83
SIX3O95343 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
SIX3O95343 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.65□□□□□ -1.83
SIX3O95343 AC092851.1-201ENST00000535964 478 ntBASIC3.65□□□□□ -1.83
SIX3O95343 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
SIX3O95343 AC008011.1-201ENST00000545989 227 ntBASIC3.65□□□□□ -1.83
SIX3O95343 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
SIX3O95343 AC009712.1-201ENST00000564938 316 ntBASIC3.65□□□□□ -1.83
SIX3O95343 AL606490.9-201ENST00000603331 271 ntBASIC3.65□□□□□ -1.83
SIX3O95343 AC069304.2-201ENST00000605154 435 ntBASIC3.65□□□□□ -1.83
SIX3O95343 FP236240.3-201ENST00000623061 327 ntBASIC3.65□□□□□ -1.83
SIX3O95343 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.65□□□□□ -1.83
SIX3O95343 AC095031.1-201ENST00000623685 672 ntBASIC3.65□□□□□ -1.83
SIX3O95343 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.65□□□□□ -1.83
SIX3O95343 SCARNA15.3-201ENST00000626315 122 ntBASIC3.65□□□□□ -1.83
SIX3O95343 SCARNA4.1-201ENST00000628597 123 ntBASIC3.65□□□□□ -1.83
SIX3O95343 AC244205.2-202ENST00000635781 342 ntBASIC3.65□□□□□ -1.83
SIX3O95343 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
SIX3O95343 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
SIX3O95343 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
SIX3O95343 AC073346.2-201ENST00000624724 2058 ntBASIC3.64□□□□□ -1.83
SIX3O95343 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
SIX3O95343 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
SIX3O95343 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
SIX3O95343 MIR423-201ENST00000362201 94 ntBASIC3.64□□□□□ -1.83
SIX3O95343 RNU4-92P-201ENST00000363783 136 ntBASIC3.64□□□□□ -1.83
SIX3O95343 Y_RNA.192-201ENST00000363977 102 ntBASIC3.64□□□□□ -1.83
SIX3O95343 RNU6-173P-201ENST00000364215 104 ntBASIC3.64□□□□□ -1.83
SIX3O95343 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
SIX3O95343 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.64□□□□□ -1.83
SIX3O95343 AC099677.1-201ENST00000420575 175 ntBASIC3.64□□□□□ -1.83
SIX3O95343 USP9YP11-201ENST00000427537 717 ntBASIC3.64□□□□□ -1.83
SIX3O95343 AL590233.1-201ENST00000430017 456 ntBASIC3.64□□□□□ -1.83
SIX3O95343 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC3.64□□□□□ -1.83
SIX3O95343 AL035246.1-201ENST00000433554 1255 ntBASIC3.64□□□□□ -1.83
SIX3O95343 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.64□□□□□ -1.83
SIX3O95343 RPL7P52-201ENST00000449200 742 ntBASIC3.64□□□□□ -1.83
SIX3O95343 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.64□□□□□ -1.83
SIX3O95343 MTCO3P16-201ENST00000454456 754 ntBASIC3.64□□□□□ -1.83
SIX3O95343 RPL18AP17-201ENST00000455326 198 ntBASIC3.64□□□□□ -1.83
SIX3O95343 RPL23AP31-201ENST00000456160 467 ntBASIC3.64□□□□□ -1.83
SIX3O95343 CFTRP1-201ENST00000456646 183 ntBASIC3.64□□□□□ -1.83
SIX3O95343 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.64□□□□□ -1.83
SIX3O95343 AC108729.1-201ENST00000487812 947 ntBASIC3.64□□□□□ -1.83
SIX3O95343 RN7SL323P-201ENST00000494712 295 ntBASIC3.64□□□□□ -1.83
SIX3O95343 AC026427.2-201ENST00000506228 536 ntBASIC3.64□□□□□ -1.83
SIX3O95343 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.64□□□□□ -1.83
SIX3O95343 HMGB3P15-201ENST00000507326 574 ntBASIC3.64□□□□□ -1.83
SIX3O95343 RN7SKP13-201ENST00000515933 244 ntBASIC3.64□□□□□ -1.83
SIX3O95343 AC008489.1-201ENST00000524271 483 ntBASIC3.64□□□□□ -1.83
SIX3O95343 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC3.64□□□□□ -1.83
SIX3O95343 REXO2-218ENST00000544827 880 ntTSL 3 BASIC3.64□□□□□ -1.83
SIX3O95343 SYF2P1-201ENST00000550658 413 ntBASIC3.64□□□□□ -1.83
SIX3O95343 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.64□□□□□ -1.83
SIX3O95343 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.64□□□□□ -1.83
SIX3O95343 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.64□□□□□ -1.83
SIX3O95343 AC090695.1-201ENST00000561269 1222 ntBASIC3.64□□□□□ -1.83
SIX3O95343 AC006960.3-201ENST00000561845 705 ntBASIC3.64□□□□□ -1.83
SIX3O95343 MIR4644-201ENST00000579929 84 ntBASIC3.64□□□□□ -1.83
SIX3O95343 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.64□□□□□ -1.83
SIX3O95343 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.64□□□□□ -1.83
SIX3O95343 AC245884.10-201ENST00000597355 337 ntBASIC3.64□□□□□ -1.83
SIX3O95343 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.64□□□□□ -1.83
SIX3O95343 AC009974.1-201ENST00000608881 455 ntBASIC3.64□□□□□ -1.83
SIX3O95343 AC027449.1-201ENST00000608890 407 ntBASIC3.64□□□□□ -1.83
SIX3O95343 AC090912.3-201ENST00000609775 533 ntBASIC3.64□□□□□ -1.83
SIX3O95343 AC025588.4-201ENST00000615802 908 ntBASIC3.64□□□□□ -1.83
SIX3O95343 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.64□□□□□ -1.83
SIX3O95343 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.64□□□□□ -1.83
SIX3O95343 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.64□□□□□ -1.83
SIX3O95343 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.64□□□□□ -1.83
SIX3O95343 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms