Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AL121821.2-201ENST00000556081 394 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 AC026464.5-201ENST00000562497 722 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXA3O43365 RN7SL356P-201ENST00000582228 248 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 AL355812.1-201ENST00000603215 216 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 AC090948.1-201ENST00000607464 549 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 USP12-203ENST00000620323 349 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXA3O43365 AP001005.3-201ENST00000622049 129 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXA3O43365 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXA3O43365 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
HOXA3O43365 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXA3O43365 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXA3O43365 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC4.26□□□□□ -1.73
HOXA3O43365 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
HOXA3O43365 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HOXA3O43365 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC4.26□□□□□ -1.73
HOXA3O43365 SCARNA15-201ENST00000607520 4325 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.26□□□□□ -1.73
HOXA3O43365 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXA3O43365 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.26□□□□□ -1.73
HOXA3O43365 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXA3O43365 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXA3O43365 NEAT1-202ENST00000501122 22743 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 AC009951.1-201ENST00000623674 2614 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
HOXA3O43365 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXA3O43365 AC093591.2-201ENST00000565254 3843 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
HOXA3O43365 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXA3O43365 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXA3O43365 AC244517.1-201ENST00000606030 2086 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXA3O43365 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXA3O43365 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXA3O43365 RNU6-552P-201ENST00000362869 119 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 RNA5SP443-201ENST00000363083 132 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 Y_RNA.100-201ENST00000363141 102 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 Y_RNA.373-201ENST00000365600 103 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HOXA3O43365 Y_RNA.474-201ENST00000384341 102 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 RNU11-4P-201ENST00000391149 133 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 AL606923.1-201ENST00000406616 190 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 RNU2-29P-201ENST00000410423 189 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 RNA5SP345-201ENST00000410646 108 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 RNU6-516P-201ENST00000411381 104 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXA3O43365 AL359265.2-201ENST00000434367 631 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 AL513533.1-201ENST00000453728 415 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 AL590639.1-201ENST00000456484 337 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 PPP1R2P5-201ENST00000457256 603 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 AC135721.1-201ENST00000497954 479 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXA3O43365 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXA3O43365 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC4.25□□□□□ -1.73
HOXA3O43365 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 RNA5SP230-201ENST00000517039 122 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 RNU6-64P-201ENST00000517119 105 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXA3O43365 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXA3O43365 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXA3O43365 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXA3O43365 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXA3O43365 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
HOXA3O43365 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXA3O43365 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXA3O43365 MIR4660-201ENST00000583549 74 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HOXA3O43365 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXA3O43365 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 AL133255.1-201ENST00000606374 441 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXA3O43365 EIF3FP1-201ENST00000613970 806 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 AC068831.8-201ENST00000620171 435 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 AL161637.1-201ENST00000622380 412 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 AC019278.1-201ENST00000623516 479 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXA3O43365 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXA3O43365 PCAT14-202ENST00000627127 3935 ntBASIC4.25□□□□□ -1.73
HOXA3O43365 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC4.25□□□□□ -1.73
HOXA3O43365 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXA3O43365 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXA3O43365 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXA3O43365 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXA3O43365 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXA3O43365 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXA3O43365 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXA3O43365 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
HOXA3O43365 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXA3O43365 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXA3O43365 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXA3O43365 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXA3O43365 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXA3O43365 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC4.24□□□□□ -1.73
HOXA3O43365 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXA3O43365 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
HOXA3O43365 AL139276.1-201ENST00000311910 1001 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXA3O43365 Y_RNA.384-201ENST00000383909 102 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms