Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AC138969.1-213ENST00000331436 462 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 OR5H2-201ENST00000355273 945 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 RPS26P8-201ENST00000393490 348 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AF228730.1-201ENST00000397972 663 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AL031679.1-201ENST00000400616 525 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AL583834.1-201ENST00000406943 343 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 RNA5SP239-201ENST00000410218 129 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AC107081.1-201ENST00000414975 361 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AIMP1P1-201ENST00000418670 937 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AC098592.1-201ENST00000419352 333 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AC006989.1-201ENST00000427212 131 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 MTND5P25-201ENST00000430499 799 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 CETN4P-201ENST00000432407 469 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 HSPE1P28-201ENST00000443139 211 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 BTF3P5-201ENST00000457252 467 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 OR9M1P-201ENST00000459641 921 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 MEMO1P3-201ENST00000459811 302 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AC078817.1-201ENST00000492623 435 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AC092045.1-201ENST00000495716 1231 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AC104685.1-201ENST00000502445 371 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 PCBP2P3-201ENST00000509726 843 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 HSPE1P23-201ENST00000509838 286 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AC108064.1-201ENST00000513791 460 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AC093853.1-201ENST00000515689 483 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 RNU6-1129P-201ENST00000515964 104 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 RGS5-218ENST00000526176 574 ntTSL 4 BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AC007424.1-203ENST00000554613 687 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AC145350.1-201ENST00000567426 208 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AC053481.3-201ENST00000577881 843 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AL136295.6-201ENST00000610486 658 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AC091304.6-201ENST00000619761 202 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AP003485.2-201ENST00000623636 610 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 ANKRD62P1-201ENST00000434304 1623 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
LIMA1Q9UHB6 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 AL022578.1-201ENST00000439330 1433 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 AL391994.1-201ENST00000254724 282 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 RNA5SP258-201ENST00000362750 119 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 RNU6-1200P-201ENST00000384162 107 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 SNORD51-201ENST00000384320 80 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 AL590084.2-201ENST00000401481 382 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 SNORA57.3-201ENST00000411095 141 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 MTATP6P27-201ENST00000416987 621 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 VPS26BP1-201ENST00000417155 755 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 AL590233.1-201ENST00000430017 456 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 MTCYBP3-201ENST00000445588 1137 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 AL606662.1-201ENST00000445763 553 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 EEF1E1P1-201ENST00000446998 430 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 ATG12P2-201ENST00000456830 416 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 HMGB1P25-201ENST00000468402 607 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 FAM172BP-201ENST00000487497 1089 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 AC020593.1-201ENST00000507399 299 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 AP006245.1-201ENST00000522549 120 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 AC239860.2-201ENST00000525886 270 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 OR4P1P-201ENST00000530808 1136 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms