Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 SNRPEP3-201ENST00000338402 276 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 RNU4-68P-201ENST00000364314 141 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 U3.29-201ENST00000391296 212 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 ERHP2-201ENST00000402323 299 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 HLFP1-201ENST00000402375 499 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 ZDHHC20P2-201ENST00000424108 429 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 NANOGP5-201ENST00000424456 877 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 AL691449.1-201ENST00000426570 421 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 TBCAP1-201ENST00000436520 327 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 AC092427.1-201ENST00000439177 601 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 MTND2P20-201ENST00000440805 661 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 RANP8-201ENST00000444720 713 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 MTCO2P25-201ENST00000447065 681 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 RPL39P6-201ENST00000448289 150 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 AC104308.1-201ENST00000454621 333 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 RPL21P11-201ENST00000461458 483 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 RN7SL542P-201ENST00000467147 294 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 VN1R105P-201ENST00000486595 910 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 RPL23AP55-201ENST00000498163 452 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 AC108064.1-201ENST00000513791 460 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 RN7SKP157-201ENST00000516174 282 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 RNA5SP179-201ENST00000517284 121 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 NDUFA5P2-201ENST00000519723 344 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 AC090877.1-201ENST00000561418 344 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 AADACP1-206ENST00000561502 1193 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 MTND1P8-201ENST00000571424 950 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 AC008739.3-201ENST00000603262 127 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 AC091167.4-201ENST00000605079 184 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 AC069304.2-201ENST00000605154 435 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 AC092650.2-201ENST00000619984 902 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 AC040168.1-201ENST00000623594 991 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 U6.101-201ENST00000637707 76 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 RLIMP1-201ENST00000339626 1680 ntBASIC3.42□□□□□ -1.86
DDX28Q9NUL7 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.42□□□□□ -1.86
DDX28Q9NUL7 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
DDX28Q9NUL7 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.41□□□□□ -1.86
DDX28Q9NUL7 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
DDX28Q9NUL7 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
DDX28Q9NUL7 SNRPEP2-201ENST00000397592 279 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 AL590084.1-201ENST00000407885 387 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 TOMM22P1-201ENST00000418578 312 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.41□□□□□ -1.86
DDX28Q9NUL7 OR8F1P-201ENST00000425243 930 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 AC092648.1-201ENST00000425870 423 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
DDX28Q9NUL7 TRIAP1P1-201ENST00000427062 225 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 RPL23AP74-201ENST00000437246 471 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 RPS29P7-201ENST00000439662 171 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.41□□□□□ -1.86
DDX28Q9NUL7 USP9YP34-201ENST00000453983 808 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC3.41□□□□□ -1.86
DDX28Q9NUL7 snoU109.4-201ENST00000458953 143 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 AC005410.1-202ENST00000460347 485 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 AC110792.1-201ENST00000491826 472 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
DDX28Q9NUL7 GTF2IP9-201ENST00000502460 301 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 HMGB1P22-201ENST00000505315 124 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC3.41□□□□□ -1.86
DDX28Q9NUL7 HMGB1P28-201ENST00000507778 552 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 PHBP14-201ENST00000512887 367 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 AC008837.2-201ENST00000513076 418 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.41□□□□□ -1.86
DDX28Q9NUL7 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.41□□□□□ -1.86
DDX28Q9NUL7 OR7E13P-201ENST00000526052 910 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC3.41□□□□□ -1.86
DDX28Q9NUL7 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.41□□□□□ -1.86
DDX28Q9NUL7 AC109635.4-202ENST00000531666 412 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.41□□□□□ -1.86
DDX28Q9NUL7 AL121603.1-201ENST00000553815 142 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 AL163153.1-201ENST00000554223 283 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 AL845331.3-202ENST00000562856 261 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.41□□□□□ -1.86
DDX28Q9NUL7 MIR4474-201ENST00000579189 78 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 RN7SL339P-201ENST00000580597 296 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 MTCO2P2-201ENST00000591258 225 ntBASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms