Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 NF1-214ENST00000490416 1329 ntTSL 3 BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 OR6C69P-201ENST00000394268 893 ntBASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 MIR1179-201ENST00000408703 91 ntBASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 Z97055.1-201ENST00000419730 712 ntBASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 AC091390.1-201ENST00000433904 331 ntBASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 AC108734.1-201ENST00000439549 399 ntBASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 AL662791.1-201ENST00000441992 928 ntBASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 AL162151.2-201ENST00000448875 158 ntBASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 HMGB3P22-202ENST00000451823 572 ntBASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 AL121877.1-201ENST00000453704 622 ntBASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 MTND1P9-201ENST00000453775 944 ntBASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 RAD23BP3-201ENST00000454157 1152 ntBASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 AC008958.1-201ENST00000511047 682 ntBASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 AC023161.2-201ENST00000551218 780 ntBASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 SETP2-201ENST00000553886 926 ntBASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 PSMB7P1-201ENST00000556349 514 ntBASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 AP001029.3-201ENST00000588063 596 ntBASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 AL161729.3-201ENST00000603533 673 ntBASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 AC020910.2-201ENST00000603635 610 ntBASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 AL158211.4-201ENST00000606988 584 ntBASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 VIS1.1-201ENST00000610517 203 ntBASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 AC011944.2-201ENST00000624440 683 ntBASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 PCMTD1P7-201ENST00000634506 357 ntBASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 MIR6830-201ENST00000636015 70 ntBASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.32□□□□□ -1.72
HERPUD2Q9BSE4 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 EXOC5P1-201ENST00000510543 1969 ntBASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 AL513185.3-201ENST00000433335 1300 ntBASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 RNU6-1078P-201ENST00000364522 103 ntBASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 AC007066.1-201ENST00000392902 381 ntBASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 PGBD4P8-201ENST00000412993 562 ntBASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 ART2BP-201ENST00000453501 499 ntBASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 HMGN2P16-201ENST00000456802 261 ntBASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 RPL35P6-201ENST00000490024 372 ntBASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 RPL31P61-201ENST00000496160 376 ntBASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 NIPA2P2-201ENST00000496376 1083 ntBASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 MYL12AP1-201ENST00000518490 515 ntBASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 AC022655.2-201ENST00000577280 318 ntBASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 MIR544B-201ENST00000582372 78 ntBASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 IPO5P1-202ENST00000600039 287 ntBASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 AC114878.2-201ENST00000604863 1251 ntBASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 AC012443.1-201ENST00000605605 231 ntBASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 AC107214.2-201ENST00000608204 634 ntBASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 AC079597.1-201ENST00000624306 508 ntBASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
HERPUD2Q9BSE4 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 116.2 ms