Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 USP9YP29-201ENST00000445112 563 ntBASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 RAD23BP3-201ENST00000454157 1152 ntBASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 AC005008.1-201ENST00000456151 612 ntBASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 AC022447.3-201ENST00000506865 495 ntBASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 MIR4444-1-201ENST00000581696 74 ntBASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 MIR4444-2-201ENST00000584390 74 ntBASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 AC005255.1-201ENST00000593748 216 ntBASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 AC104073.3-201ENST00000610942 955 ntBASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 AL121772.2-201ENST00000614331 297 ntBASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 AC073968.1-201ENST00000618594 637 ntBASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 AC012442.3-202ENST00000636742 206 ntBASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 KPNA2P2-201ENST00000419546 1489 ntBASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 AC092104.1-201ENST00000497346 1441 ntBASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 AC097714.1-201ENST00000511272 1647 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 AC015813.6-201ENST00000624409 5808 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 RNU4-75P-201ENST00000364621 146 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 SNORA62.3-201ENST00000365110 153 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 MIR30B-201ENST00000384850 88 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 HDGFP1-201ENST00000405943 252 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 AL663109.1-201ENST00000411498 844 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 SLC44A3-AS1-205ENST00000424505 612 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 GOT2P5-201ENST00000433995 546 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 AC007389.2-201ENST00000434630 306 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 SKP1P1-201ENST00000438081 489 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 MUPP-201ENST00000438111 566 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 AL357520.1-201ENST00000441557 453 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 SUMO2P2-201ENST00000456482 255 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 AP000942.1-201ENST00000463969 747 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 AC091153.1-201ENST00000466297 402 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 AP001025.2-201ENST00000490908 477 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 PRELID3BP7-201ENST00000503606 469 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 PDLIM1P4-201ENST00000504327 1006 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 CBX3P3-201ENST00000508108 532 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 AC022447.1-201ENST00000515358 464 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 AP002453.2-201ENST00000533503 320 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 AP000403.1-201ENST00000603349 851 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 MIR432-201ENST00000606207 94 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 AL445264.1-201ENST00000621719 171 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 MIR7702-201ENST00000621931 59 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 AP005264.7-201ENST00000625003 745 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 AC097504.1-201ENST00000515103 2415 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 NUP58P1-201ENST00000502546 1738 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 NEAT1-202ENST00000501122 22743 ntBASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.28□□□□□ -1.72
PAAF1Q9BRP4 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PAAF1Q9BRP4 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
PAAF1Q9BRP4 AL592437.2-201ENST00000421655 2434 ntBASIC4.27□□□□□ -1.73
PAAF1Q9BRP4 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
PAAF1Q9BRP4 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.27□□□□□ -1.73
PAAF1Q9BRP4 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.27□□□□□ -1.73
PAAF1Q9BRP4 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PAAF1Q9BRP4 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
PAAF1Q9BRP4 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
PAAF1Q9BRP4 Y_RNA.97-201ENST00000363094 102 ntBASIC4.27□□□□□ -1.73
PAAF1Q9BRP4 RNU5E-5P-201ENST00000365379 116 ntBASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms