Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 NECAP1P2-201ENST00000455668 727 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 snoU13.7-201ENST00000459220 104 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 AC104689.1-201ENST00000473356 768 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 AC015724.1-201ENST00000478577 156 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 NCOR1P1-202ENST00000486162 291 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 AC093663.1-201ENST00000497190 394 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.77□□□□□ -1.81
USP28Q96RU2 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC3.77□□□□□ -1.81
USP28Q96RU2 TMEM248P1-201ENST00000510579 951 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 RN7SKP96-201ENST00000516948 297 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 AC026403.1-201ENST00000518938 295 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC3.77□□□□□ -1.81
USP28Q96RU2 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.77□□□□□ -1.81
USP28Q96RU2 AC007458.1-201ENST00000542812 373 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 ZNF321P-202ENST00000550843 495 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 MIR3186-201ENST00000577404 85 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 AC090312.2-201ENST00000582687 378 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 AC006130.2-201ENST00000586202 326 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC3.77□□□□□ -1.81
USP28Q96RU2 AC022146.1-201ENST00000595307 847 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.77□□□□□ -1.81
USP28Q96RU2 AC092954.1-201ENST00000609121 445 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 AC107075.1-201ENST00000613695 314 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC3.77□□□□□ -1.81
USP28Q96RU2 Z99129.2-201ENST00000619967 314 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 OR1S1-201ENST00000624470 978 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 AC017037.3-201ENST00000625016 472 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 MFSD8-245ENST00000641743 948 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
USP28Q96RU2 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
USP28Q96RU2 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
USP28Q96RU2 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.77□□□□□ -1.81
USP28Q96RU2 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
USP28Q96RU2 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
USP28Q96RU2 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
USP28Q96RU2 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.76□□□□□ -1.81
USP28Q96RU2 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.76□□□□□ -1.81
USP28Q96RU2 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
USP28Q96RU2 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
USP28Q96RU2 RNU6-83P-201ENST00000384568 112 ntBASIC3.76□□□□□ -1.81
USP28Q96RU2 MIR607-201ENST00000385241 96 ntBASIC3.76□□□□□ -1.81
USP28Q96RU2 AL590084.1-201ENST00000407885 387 ntBASIC3.76□□□□□ -1.81
USP28Q96RU2 BX323014.1-201ENST00000412876 237 ntBASIC3.76□□□□□ -1.81
USP28Q96RU2 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC3.76□□□□□ -1.81
USP28Q96RU2 RPL36AP36-201ENST00000418616 301 ntBASIC3.76□□□□□ -1.81
USP28Q96RU2 AC245291.1-201ENST00000419501 328 ntBASIC3.76□□□□□ -1.81
USP28Q96RU2 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.76□□□□□ -1.81
USP28Q96RU2 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.76□□□□□ -1.81
USP28Q96RU2 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC3.76□□□□□ -1.81
USP28Q96RU2 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC3.76□□□□□ -1.81
USP28Q96RU2 RPL21P112-201ENST00000434403 463 ntBASIC3.76□□□□□ -1.81
USP28Q96RU2 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.76□□□□□ -1.81
USP28Q96RU2 RPL23AP22-201ENST00000437556 453 ntBASIC3.76□□□□□ -1.81
USP28Q96RU2 CST9LP2-201ENST00000437612 320 ntBASIC3.76□□□□□ -1.81
USP28Q96RU2 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.76□□□□□ -1.81
USP28Q96RU2 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.76□□□□□ -1.81
USP28Q96RU2 AC079776.3-201ENST00000450665 370 ntBASIC3.76□□□□□ -1.81
USP28Q96RU2 CFTRP1-201ENST00000456646 183 ntBASIC3.76□□□□□ -1.81
USP28Q96RU2 AC078785.3-201ENST00000476607 425 ntBASIC3.76□□□□□ -1.81
USP28Q96RU2 AL049830.2-201ENST00000480072 201 ntBASIC3.76□□□□□ -1.81
USP28Q96RU2 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.76□□□□□ -1.81
USP28Q96RU2 RPS27P23-201ENST00000487608 251 ntBASIC3.76□□□□□ -1.81
USP28Q96RU2 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC3.76□□□□□ -1.81
USP28Q96RU2 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.76□□□□□ -1.81
USP28Q96RU2 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC3.76□□□□□ -1.81
USP28Q96RU2 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC3.76□□□□□ -1.81
USP28Q96RU2 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
USP28Q96RU2 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC3.76□□□□□ -1.81
USP28Q96RU2 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC3.76□□□□□ -1.81
USP28Q96RU2 VBP1-203ENST00000535916 944 ntTSL 2 BASIC3.76□□□□□ -1.81
USP28Q96RU2 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.76□□□□□ -1.81
USP28Q96RU2 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.76□□□□□ -1.81
USP28Q96RU2 AL442163.2-201ENST00000553912 710 ntBASIC3.76□□□□□ -1.81
USP28Q96RU2 AADACP1-206ENST00000561502 1193 ntBASIC3.76□□□□□ -1.81
USP28Q96RU2 AC009094.1-201ENST00000564443 426 ntBASIC3.76□□□□□ -1.81
USP28Q96RU2 AC145350.1-201ENST00000567426 208 ntBASIC3.76□□□□□ -1.81
USP28Q96RU2 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC3.76□□□□□ -1.81
USP28Q96RU2 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
USP28Q96RU2 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.76□□□□□ -1.81
USP28Q96RU2 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.76□□□□□ -1.81
USP28Q96RU2 AC090616.5-202ENST00000582111 297 ntBASIC3.76□□□□□ -1.81
USP28Q96RU2 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.76□□□□□ -1.81
USP28Q96RU2 NIFKP6-201ENST00000598115 845 ntBASIC3.76□□□□□ -1.81
USP28Q96RU2 AP000484.1-201ENST00000620067 1252 ntBASIC3.76□□□□□ -1.81
USP28Q96RU2 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.76□□□□□ -1.81
USP28Q96RU2 AP005901.5-201ENST00000545779 1796 ntBASIC3.76□□□□□ -1.81
USP28Q96RU2 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.75□□□□□ -1.81
USP28Q96RU2 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
USP28Q96RU2 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC3.75□□□□□ -1.81
USP28Q96RU2 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.75□□□□□ -1.81
USP28Q96RU2 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
USP28Q96RU2 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
USP28Q96RU2 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC3.75□□□□□ -1.81
USP28Q96RU2 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.75□□□□□ -1.81
USP28Q96RU2 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
USP28Q96RU2 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.75□□□□□ -1.81
USP28Q96RU2 HSFY4P-201ENST00000415994 1181 ntBASIC3.75□□□□□ -1.81
USP28Q96RU2 AC006960.1-201ENST00000419980 153 ntBASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 124.4 ms