Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC4.19□□□□□ -1.74
SKA1Q96BD8 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
SKA1Q96BD8 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
SKA1Q96BD8 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
SKA1Q96BD8 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.19□□□□□ -1.74
SKA1Q96BD8 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.19□□□□□ -1.74
SKA1Q96BD8 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC4.19□□□□□ -1.74
SKA1Q96BD8 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
SKA1Q96BD8 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
SKA1Q96BD8 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
SKA1Q96BD8 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SKA1Q96BD8 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.18□□□□□ -1.74
SKA1Q96BD8 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.18□□□□□ -1.74
SKA1Q96BD8 AP002001.2-201ENST00000529025 1469 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
SKA1Q96BD8 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
SKA1Q96BD8 RNA5SP130-201ENST00000364431 114 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 RNU6-882P-201ENST00000391025 103 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 RPL32P23-201ENST00000397237 405 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC4.18□□□□□ -1.74
SKA1Q96BD8 RPL21P65-201ENST00000406094 466 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 MIR1179-201ENST00000408703 91 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 RNU6ATAC-201ENST00000408749 126 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 RN7SKP159-201ENST00000410657 292 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC4.18□□□□□ -1.74
SKA1Q96BD8 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC4.18□□□□□ -1.74
SKA1Q96BD8 CCDC58P2-201ENST00000417131 366 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC4.18□□□□□ -1.74
SKA1Q96BD8 OR8F1P-201ENST00000425243 930 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC4.18□□□□□ -1.74
SKA1Q96BD8 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.18□□□□□ -1.74
SKA1Q96BD8 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC4.18□□□□□ -1.74
SKA1Q96BD8 MTCYBP34-201ENST00000439552 670 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 MEMO1P3-201ENST00000459811 302 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 RPL38P1-201ENST00000460914 211 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 RPS23P3-201ENST00000470993 430 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 AC104563.1-201ENST00000476147 376 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 RPS29P19-201ENST00000479709 171 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.18□□□□□ -1.74
SKA1Q96BD8 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC4.18□□□□□ -1.74
SKA1Q96BD8 AC093281.2-201ENST00000510153 597 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 TXNP6-201ENST00000510190 310 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC4.18□□□□□ -1.74
SKA1Q96BD8 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC4.18□□□□□ -1.74
SKA1Q96BD8 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC4.18□□□□□ -1.74
SKA1Q96BD8 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.18□□□□□ -1.74
SKA1Q96BD8 AC087465.1-201ENST00000560574 245 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.18□□□□□ -1.74
SKA1Q96BD8 AGGF1P5-201ENST00000567900 919 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 AC141257.3-201ENST00000572906 215 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC4.18□□□□□ -1.74
SKA1Q96BD8 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.18□□□□□ -1.74
SKA1Q96BD8 AL354984.3-201ENST00000604803 325 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 ACTR3BP1-201ENST00000605584 1247 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 AC012443.1-201ENST00000605605 231 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC4.18□□□□□ -1.74
SKA1Q96BD8 AC090246.1-201ENST00000616499 426 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 MIR7702-201ENST00000621931 59 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 AL445363.3-201ENST00000623080 671 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.18□□□□□ -1.74
SKA1Q96BD8 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SKA1Q96BD8 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC4.18□□□□□ -1.74
SKA1Q96BD8 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.18□□□□□ -1.74
SKA1Q96BD8 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SKA1Q96BD8 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
SKA1Q96BD8 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SKA1Q96BD8 THUMPD3P1-201ENST00000506556 1480 ntBASIC4.18□□□□□ -1.74
SKA1Q96BD8 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
SKA1Q96BD8 TAB3P1-202ENST00000452645 1634 ntBASIC4.17□□□□□ -1.74
SKA1Q96BD8 RLIMP1-201ENST00000339626 1680 ntBASIC4.17□□□□□ -1.74
SKA1Q96BD8 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
SKA1Q96BD8 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.17□□□□□ -1.74
SKA1Q96BD8 FRG1BP-201ENST00000278882 761 ntBASIC4.17□□□□□ -1.74
SKA1Q96BD8 FAM133CP-201ENST00000332869 704 ntBASIC4.17□□□□□ -1.74
SKA1Q96BD8 AL161781.1-201ENST00000354277 403 ntBASIC4.17□□□□□ -1.74
SKA1Q96BD8 AL136372.1-201ENST00000403060 228 ntBASIC4.17□□□□□ -1.74
SKA1Q96BD8 RPL21P32-201ENST00000419877 477 ntBASIC4.17□□□□□ -1.74
SKA1Q96BD8 ZYG11AP1-201ENST00000430329 837 ntBASIC4.17□□□□□ -1.74
SKA1Q96BD8 AC007389.2-201ENST00000434630 306 ntBASIC4.17□□□□□ -1.74
SKA1Q96BD8 AL356535.1-201ENST00000440335 398 ntBASIC4.17□□□□□ -1.74
SKA1Q96BD8 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
SKA1Q96BD8 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC4.17□□□□□ -1.74
SKA1Q96BD8 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.17□□□□□ -1.74
SKA1Q96BD8 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC4.17□□□□□ -1.74
SKA1Q96BD8 RNA5SP246-201ENST00000458909 119 ntBASIC4.17□□□□□ -1.74
SKA1Q96BD8 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.17□□□□□ -1.74
SKA1Q96BD8 RPL31P61-201ENST00000496160 376 ntBASIC4.17□□□□□ -1.74
SKA1Q96BD8 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.17□□□□□ -1.74
SKA1Q96BD8 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC4.17□□□□□ -1.74
SKA1Q96BD8 RNA5SP216-201ENST00000516111 123 ntBASIC4.17□□□□□ -1.74
SKA1Q96BD8 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC4.17□□□□□ -1.74
SKA1Q96BD8 COX6CP8-201ENST00000522620 226 ntBASIC4.17□□□□□ -1.74
SKA1Q96BD8 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC4.17□□□□□ -1.74
SKA1Q96BD8 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.17□□□□□ -1.74
SKA1Q96BD8 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.17□□□□□ -1.74
SKA1Q96BD8 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.17□□□□□ -1.74
SKA1Q96BD8 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC4.17□□□□□ -1.74
SKA1Q96BD8 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC4.17□□□□□ -1.74
SKA1Q96BD8 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC4.17□□□□□ -1.74
SKA1Q96BD8 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 132.1 ms