Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 AC010486.1-201ENST00000511793 424 ntBASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 RN7SKP99-201ENST00000517028 307 ntBASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 AC131935.1-201ENST00000524621 333 ntBASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 TRIM51DP-201ENST00000529746 596 ntBASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 SNRPGP16-201ENST00000533275 226 ntBASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 AC011712.1-201ENST00000588959 234 ntBASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 AC104763.2-201ENST00000604179 382 ntBASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 AC114477.1-201ENST00000605097 605 ntBASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 AL365204.3-201ENST00000612448 685 ntBASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 Y_RNA.804-201ENST00000615262 101 ntBASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 AC096861.1-201ENST00000616652 240 ntBASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 AC010338.1-201ENST00000621823 717 ntBASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 AC112200.1-201ENST00000625015 234 ntBASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 ASNSP3-201ENST00000451989 1306 ntBASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 AC139713.2-214ENST00000642059 1811 ntBASIC4.34□□□□□ -1.71
CLRN3Q8NCR9 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.34□□□□□ -1.72
CLRN3Q8NCR9 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
CLRN3Q8NCR9 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.72
CLRN3Q8NCR9 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
CLRN3Q8NCR9 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
CLRN3Q8NCR9 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
CLRN3Q8NCR9 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 PRO1804-201ENST00000623780 2050 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 AC011493.1-201ENST00000596753 1632 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 AL354685.2-201ENST00000448218 1447 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 Y_RNA.231-201ENST00000364358 102 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 Y_RNA.576-201ENST00000384781 102 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 MIR1266-201ENST00000408125 84 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 RNA5SP345-201ENST00000410646 108 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 RNU2-41P-201ENST00000410991 178 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 THEM7P-201ENST00000419556 672 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 OR52B5P-201ENST00000435337 951 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 AC023141.8-201ENST00000442554 208 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 SNRPEP8-201ENST00000442866 260 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 HIGD1AP16-201ENST00000450986 258 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 FABP5P13-201ENST00000452144 328 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 RN7SL393P-201ENST00000463588 296 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 AC092451.1-201ENST00000480211 153 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 AC104806.1-201ENST00000508720 308 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 RNU6-677P-201ENST00000516914 101 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 IGKV2D-23-201ENST00000518179 286 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 MYL12AP1-201ENST00000518490 515 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 AC105031.1-201ENST00000518550 476 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 AP006587.4-201ENST00000526053 529 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 OR5B19P-201ENST00000531766 928 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 AC067852.3-201ENST00000589177 561 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 AC104985.2-201ENST00000620598 500 ntBASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
CLRN3Q8NCR9 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CLRN3Q8NCR9 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms