Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 HMGN2P27-201ENST00000427352 270 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 NANOGP6-201ENST00000429190 847 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 RPS24P8-201ENST00000431490 402 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 ARPC3P1-201ENST00000437218 533 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 TRGVB-201ENST00000453257 471 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 AC099563.1-201ENST00000456086 418 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 HMGN1P10-201ENST00000474557 553 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 VN1R105P-201ENST00000486595 910 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 AC117522.3-201ENST00000507974 584 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 RNU6-150P-201ENST00000516237 95 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 RNU6-1153P-201ENST00000516760 105 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 Y_RNA.701-201ENST00000516812 110 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 CBX3P5-201ENST00000552017 521 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 AP001180.3-201ENST00000582221 145 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 MIR3158-1-201ENST00000583596 81 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 AC010201.1-201ENST00000605051 540 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 FAM27D1-201ENST00000612308 341 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 AC243773.3-201ENST00000613270 256 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 AC009233.1-201ENST00000616477 371 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 AC138965.3-201ENST00000623875 498 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 VPS8-228ENST00000628962 207 ntTSL 5 BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 VPS35P1-201ENST00000563400 1518 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 AC138915.3-201ENST00000562908 1389 ntBASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 AL512646.1-201ENST00000269395 1077 ntBASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 RNU4-73P-201ENST00000363164 141 ntBASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 RNU6-251P-201ENST00000363235 104 ntBASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 Y_RNA.279-201ENST00000364763 95 ntBASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 RNU6-1151P-201ENST00000384684 107 ntBASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 MIR320C1-201ENST00000408566 88 ntBASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 RN7SKP167-201ENST00000411047 285 ntBASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 USP9YP36-201ENST00000424581 829 ntBASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 LSM1P1-201ENST00000438629 273 ntBASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 MTCO1P27-201ENST00000448269 226 ntBASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 AC007182.2-201ENST00000489251 402 ntBASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 FTH1P21-201ENST00000512179 511 ntBASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 AC006499.2-201ENST00000513470 337 ntBASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 BNIP3P11-201ENST00000603878 563 ntBASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 AP001521.1-201ENST00000609150 300 ntBASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 AC007546.2-201ENST00000623996 360 ntBASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 PTER-201ENST00000298942 3448 ntTSL 5 BASIC5.67□□□□□ -1.5
USHBP1Q8N6Y0 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 OR11H4-201ENST00000315409 1082 ntBASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 U8.3-201ENST00000363321 132 ntBASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 RNA5SP513-201ENST00000364648 118 ntBASIC5.66□□□□□ -1.5
USHBP1Q8N6Y0 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms