Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC069545.1-201ENST00000605671 358 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 AC090116.1-201ENST00000615679 446 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 AL158163.2-201ENST00000619110 700 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
SKA3Q8IX90 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.08□□□□□ -1.92
SKA3Q8IX90 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.08□□□□□ -1.92
SKA3Q8IX90 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
SKA3Q8IX90 AL157700.1-201ENST00000561973 1432 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 AL365440.1-201ENST00000436135 2167 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 AC118273.1-201ENST00000525324 3006 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
SKA3Q8IX90 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.08□□□□□ -1.92
SKA3Q8IX90 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
SKA3Q8IX90 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
SKA3Q8IX90 AC130650.2-201ENST00000618736 2403 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 RNA5SP383-201ENST00000362934 120 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 RNU6-263P-201ENST00000363811 107 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 RNU6-339P-201ENST00000384310 107 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 MIR200C-201ENST00000384980 68 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 SNORA40.2-201ENST00000390847 128 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 RNA5SP107-201ENST00000411358 122 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 NDUFB4P5-201ENST00000415445 361 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 AC068533.1-201ENST00000418542 415 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
SKA3Q8IX90 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 TRIAP1P1-201ENST00000427062 225 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 AC091286.1-201ENST00000431233 461 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 AC073063.1-201ENST00000434352 607 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 AC241584.1-201ENST00000438469 1241 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 AC004854.1-201ENST00000440356 349 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 Z95327.1-201ENST00000446082 482 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 AL034418.1-201ENST00000448675 860 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 RPS4XP2-201ENST00000458402 793 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 OR5H5P-201ENST00000503164 928 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 KCTD9P5-201ENST00000504141 1170 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 MTCO3P44-201ENST00000510977 541 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 SCARNA1-201ENST00000517138 166 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 OR4R3P-201ENST00000525084 838 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 AC103843.2-201ENST00000530523 682 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
SKA3Q8IX90 MTND3P13-201ENST00000574391 343 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 MIR3912-201ENST00000577566 105 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 MIR4509-3-201ENST00000578671 94 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 MIR3158-1-201ENST00000583596 81 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 MIR4509-2-201ENST00000583920 94 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 MIR3922-201ENST00000585192 84 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 AL160237.3-201ENST00000604114 1013 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 SNORA51-201ENST00000606420 132 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 AL157392.4-201ENST00000609756 345 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 MIR7851-201ENST00000610611 160 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 AC006133.1-201ENST00000617106 264 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 MIR4509-1-201ENST00000618224 94 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 AC112200.1-201ENST00000625015 234 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 ZNF37BP-203ENST00000452306 1352 ntBASIC3.07□□□□□ -1.92
SKA3Q8IX90 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
SKA3Q8IX90 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
SKA3Q8IX90 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.07□□□□□ -1.92
SKA3Q8IX90 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.06□□□□□ -1.92
SKA3Q8IX90 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.06□□□□□ -1.92
SKA3Q8IX90 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
SKA3Q8IX90 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
SKA3Q8IX90 RNU5D-1-201ENST00000363299 116 ntBASIC3.06□□□□□ -1.92
SKA3Q8IX90 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
SKA3Q8IX90 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.06□□□□□ -1.92
SKA3Q8IX90 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.06□□□□□ -1.92
SKA3Q8IX90 AL133384.1-201ENST00000412744 351 ntBASIC3.06□□□□□ -1.92
SKA3Q8IX90 LUZP4P1-201ENST00000415420 344 ntBASIC3.06□□□□□ -1.92
SKA3Q8IX90 CRYBB2P1-203ENST00000415709 538 ntBASIC3.06□□□□□ -1.92
SKA3Q8IX90 AC007435.1-201ENST00000421086 415 ntBASIC3.06□□□□□ -1.92
SKA3Q8IX90 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.06□□□□□ -1.92
SKA3Q8IX90 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC3.06□□□□□ -1.92
SKA3Q8IX90 AC004022.1-201ENST00000447766 1066 ntBASIC3.06□□□□□ -1.92
SKA3Q8IX90 SLC31A1P1-201ENST00000451221 567 ntBASIC3.06□□□□□ -1.92
SKA3Q8IX90 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC3.06□□□□□ -1.92
SKA3Q8IX90 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.06□□□□□ -1.92
SKA3Q8IX90 AC010301.1-201ENST00000473936 355 ntBASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms