Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 NFIB-202ENST00000380924 840 ntTSL 5 BASIC4.78□□□□□ -1.64
USP39Q53GS9 RNU6-809P-201ENST00000384461 107 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 MIR320B1-201ENST00000390209 79 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 AL356432.1-201ENST00000405809 419 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 SNRPEP10-201ENST00000420249 274 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 RPEP3-201ENST00000425462 676 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC4.78□□□□□ -1.64
USP39Q53GS9 OR4F13P-201ENST00000428478 931 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 FCF1P1-201ENST00000432690 571 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.78□□□□□ -1.64
USP39Q53GS9 RPS17P8-201ENST00000434525 335 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.78□□□□□ -1.64
USP39Q53GS9 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC4.78□□□□□ -1.64
USP39Q53GS9 GEMIN8P3-201ENST00000445417 720 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 AC108463.1-201ENST00000450258 347 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC4.78□□□□□ -1.64
USP39Q53GS9 NUTF2P7-201ENST00000453086 375 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.78□□□□□ -1.64
USP39Q53GS9 AC109327.1-201ENST00000471666 403 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.78□□□□□ -1.64
USP39Q53GS9 AL035404.1-201ENST00000497982 568 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 AC111193.1-201ENST00000504097 155 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 AC098799.3-201ENST00000506095 438 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 AC091868.1-201ENST00000508746 304 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.78□□□□□ -1.64
USP39Q53GS9 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.78□□□□□ -1.64
USP39Q53GS9 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC4.78□□□□□ -1.64
USP39Q53GS9 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC4.78□□□□□ -1.64
USP39Q53GS9 AC015795.1-201ENST00000513669 327 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 RNA5SP216-201ENST00000516111 123 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 RNU2-46P-201ENST00000517038 113 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC4.78□□□□□ -1.64
USP39Q53GS9 AP003467.2-201ENST00000520175 319 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.78□□□□□ -1.64
USP39Q53GS9 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC4.78□□□□□ -1.64
USP39Q53GS9 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC4.78□□□□□ -1.64
USP39Q53GS9 MIR5699-201ENST00000578903 90 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.78□□□□□ -1.64
USP39Q53GS9 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.78□□□□□ -1.64
USP39Q53GS9 RMST_3.1-201ENST00000611651 109 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC4.78□□□□□ -1.64
USP39Q53GS9 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.78□□□□□ -1.64
USP39Q53GS9 AC139792.3-201ENST00000623525 224 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
USP39Q53GS9 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
USP39Q53GS9 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
USP39Q53GS9 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
USP39Q53GS9 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.78□□□□□ -1.64
USP39Q53GS9 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
USP39Q53GS9 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
USP39Q53GS9 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
USP39Q53GS9 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
USP39Q53GS9 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
USP39Q53GS9 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
USP39Q53GS9 RNU6-767P-201ENST00000384132 107 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 VN1R8P-201ENST00000407739 893 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 AL603766.1-201ENST00000407763 664 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 RNA5SP498-201ENST00000411342 120 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.77□□□□□ -1.65
USP39Q53GS9 AL591848.1-201ENST00000413092 322 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 AL136133.1-201ENST00000413694 376 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
USP39Q53GS9 AC083875.1-201ENST00000419509 405 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC4.77□□□□□ -1.65
USP39Q53GS9 AL353193.1-201ENST00000421444 268 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 AL035410.1-201ENST00000427409 427 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 MTCO2P12-201ENST00000427426 682 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 NPM1P34-201ENST00000428821 893 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC4.77□□□□□ -1.65
USP39Q53GS9 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.77□□□□□ -1.65
USP39Q53GS9 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.77□□□□□ -1.65
USP39Q53GS9 UBE2V1P5-201ENST00000440070 405 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC4.77□□□□□ -1.65
USP39Q53GS9 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC4.77□□□□□ -1.65
USP39Q53GS9 RNU6-420P-201ENST00000458780 107 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 RPS20P20-201ENST00000460498 340 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 RPL7P48-201ENST00000461513 746 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 AC011276.1-201ENST00000469688 323 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 RPS27P23-201ENST00000487608 251 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 AC005912.1-201ENST00000495392 255 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 AC139783.2-201ENST00000504847 1145 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC4.77□□□□□ -1.65
USP39Q53GS9 MTND5P4-201ENST00000514978 288 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 RNU6-583P-201ENST00000516012 92 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC4.77□□□□□ -1.65
USP39Q53GS9 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC4.77□□□□□ -1.65
USP39Q53GS9 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.77□□□□□ -1.65
USP39Q53GS9 AP003034.1-201ENST00000534621 422 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.77□□□□□ -1.65
USP39Q53GS9 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC4.77□□□□□ -1.65
USP39Q53GS9 POLR2KP1-201ENST00000553226 168 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 AL109766.1-201ENST00000555080 552 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 AC084783.1-201ENST00000565846 910 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 AC034268.2-201ENST00000571784 482 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 CYCSP40-201ENST00000575927 294 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 MIR1254-2-201ENST00000579553 63 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 AC015917.1-201ENST00000579654 510 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.77□□□□□ -1.65
USP39Q53GS9 AC013553.2-201ENST00000604244 589 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 AL136363.1-201ENST00000605349 337 ntBASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms